Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_F13
         (1110 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    27   0.34 
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    23   4.2  
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    23   5.5  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   9.6  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   9.6  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      22   9.6  

>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 26.6 bits (56), Expect = 0.34
 Identities = 15/43 (34%), Positives = 15/43 (34%), Gaps = 8/43 (18%)
 Frame = +1

Query: 850 PXXPPXPPPXXXXPPXPP--------PPXPXXXPXPPPPXXPP 954
           P   P P      P  PP        PP P   P P PP  PP
Sbjct: 149 PKYEPNPSIIDPGPALPPTGFLCNNYPPLPQVPPLPLPPIFPP 191



 Score = 24.6 bits (51), Expect = 1.4
 Identities = 13/36 (36%), Positives = 13/36 (36%), Gaps = 2/36 (5%)
 Frame = +3

Query: 459 PXXXPPPPXXPPPP--PXXGGXAXRXPPPPXPPPXP 560
           P   P P    P P  P  G      PP P  PP P
Sbjct: 149 PKYEPNPSIIDPGPALPPTGFLCNNYPPLPQVPPLP 184



 Score = 22.2 bits (45), Expect = 7.3
 Identities = 12/44 (27%), Positives = 12/44 (27%)
 Frame = +3

Query: 627 PXPPXXXPPXPXSPXXXXXXPPPPXXXXPPXXXPPPXXPXXXPP 758
           P P    P     P        PP    PP   PP   P    P
Sbjct: 153 PNPSIIDPGPALPPTGFLCNNYPPLPQVPPLPLPPIFPPTMINP 196


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 23.0 bits (47), Expect = 4.2
 Identities = 13/47 (27%), Positives = 13/47 (27%)
 Frame = +1

Query: 589 PXPPPPXPPXXXPPPPPXXXPPXXFXPXPXPXXPPPPXXXPPXXXXP 729
           P  P   PP    P P    P         P  PP P   P     P
Sbjct: 65  PIRPVALPPKREIPSPKRSSPILAEKVSVSPTTPPTPSPPPEERLTP 111



 Score = 22.2 bits (45), Expect = 7.3
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 924 PXPPPPPXPPP 956
           P  PP P PPP
Sbjct: 95  PTTPPTPSPPP 105



 Score = 21.8 bits (44), Expect = 9.6
 Identities = 12/44 (27%), Positives = 12/44 (27%)
 Frame = +3

Query: 837 PPXXXXPPPXXPPPXPXXPXXPPPXXXXXPXPPPPPXPPPXPXA 968
           PP    P P    P         P     P PPP     P   A
Sbjct: 72  PPKREIPSPKRSSPILAEKVSVSPTTPPTPSPPPEERLTPSKDA 115


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 22.6 bits (46), Expect = 5.5
 Identities = 10/32 (31%), Positives = 11/32 (34%)
 Frame = +2

Query: 632 PPXXXPPPPXFXXXXXXXXPPPXXXXPPXXPP 727
           P    PPPP +        P P    PP   P
Sbjct: 159 PLHYPPPPPVYTHHYARYHPYPNFGVPPAGIP 190


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.8 bits (44), Expect = 9.6
 Identities = 8/18 (44%), Positives = 8/18 (44%)
 Frame = +1

Query: 601  PPXPPXXXPPPPPXXXPP 654
            PP PP    PP P    P
Sbjct: 1376 PPIPPTSEKPPLPEELKP 1393


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.8 bits (44), Expect = 9.6
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +3

Query: 525 RXPPPPXPPPXPP 563
           + PPPP P   PP
Sbjct: 734 KLPPPPHPHHQPP 746


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.8 bits (44), Expect = 9.6
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +3

Query: 525 RXPPPPXPPPXPP 563
           + PPPP P   PP
Sbjct: 626 KLPPPPHPHHQPP 638


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.314    0.163    0.634 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,891
Number of Sequences: 336
Number of extensions: 8687
Number of successful extensions: 24
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 122,585
effective HSP length: 58
effective length of database: 103,097
effective search space used: 32063167
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)