Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_F12
         (859 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40678| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_51116| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.4  
SB_40684| Best HMM Match : NIF (HMM E-Value=0)                         28   8.5  
SB_49641| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  
SB_41898| Best HMM Match : EGF_CA (HMM E-Value=3.9e-14)                28   8.5  
SB_35344| Best HMM Match : PRP1_N (HMM E-Value=0)                      28   8.5  

>SB_40678| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 236

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 16/59 (27%), Positives = 29/59 (49%)
 Frame = +3

Query: 237 MFEDIKEIAKEYNIEKSCDKYMNVDVVKQFMEMYKMGMLPRGETFVHTNELQMEEAVKV 413
           + ++I  I K++   K  +K MN++ +   MEMY   ML    TF+ + +       K+
Sbjct: 71  IMQEIGAIVKKHT-HKGEEKQMNINAIPNNMEMYMAFMLGNHLTFIDSFQFMSSSLEKL 128


>SB_51116| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 789

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 28/106 (26%), Positives = 42/106 (39%)
 Frame = -3

Query: 605 DMAVNEEVGIDLVRSGQVETLAVGSVEARASKSVDEHASVDPFSHPARSPHENIEVLSVV 426
           D++V+ ++G+D+     V       V      SVD   SVD       S   N+ V   V
Sbjct: 287 DVSVDVDIGVDVSVDVNVSVDVDVDVSVDVDVSVDVDVSVDVDVGVDVSVDVNVSVDVDV 346

Query: 425 EDSEDFDGFFHLELVGVDEGLSTRXXXXXXXXXXXLNDIDIHVLVA 288
           + S DFD    +  V VD G+                D+D+ V V+
Sbjct: 347 DVSVDFDADVDVS-VDVDVGVDVSVNVDVPVDVDVYVDVDVGVDVS 391


>SB_40684| Best HMM Match : NIF (HMM E-Value=0)
          Length = 402

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
 Frame = +3

Query: 348 MLPRGETFVHTNELQMEEAVKVFRVLYYAKDFDVFMRTACWMR---ERINGGMFVYAFTG 518
           +L   ET VH +  ++E+A   F V Y    + VF+RT   ++   ER++    V  FT 
Sbjct: 220 VLDLDETLVHCSLNKLEDATLSFPVSYQDITYQVFVRTRPHLKYFLERVSKVFEVILFTA 279

Query: 519 A 521
           +
Sbjct: 280 S 280


>SB_49641| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 755

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +1

Query: 481 GSTEACSSTLLLARASTEPTARVSTCPLLTRSIPTSSLTAMSS 609
           G+TEA SS  +++ AST  T   +T      + PT +  A  S
Sbjct: 316 GTTEALSSQSVISNASTTSTTSATTIAATGATTPTDTTQATPS 358


>SB_41898| Best HMM Match : EGF_CA (HMM E-Value=3.9e-14)
          Length = 1087

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 32/125 (25%), Positives = 58/125 (46%), Gaps = 2/125 (1%)
 Frame = +3

Query: 237 MFEDIKEIAKEYNI--EKSCDKYMNVDVVKQFMEMYKMGMLPRGETFVHTNELQMEEAVK 410
           + ++I  I K++     K  +K MN++ +   ME Y   ML    TF+ + ++ M  +++
Sbjct: 645 IMKEIGAIVKKHTDVNSKGEEKQMNINAIPNNMEKYMAFMLGNHLTFIDSFQV-MNFSLE 703

Query: 411 VFRVLYYAKDFDVFMRTACWMRERINGGMFVYAFTGACFHRTDCKGLYLPAPYEIYPYFF 590
              + Y +K F    R     R+    G++ Y +  + F R D K   LPA  + Y   +
Sbjct: 704 RLGLKYTSKSFK-GKRLDLMARK----GVYPYDYMDS-FERFDDK---LPAKEDFYSIMY 754

Query: 591 VDSHV 605
            D H+
Sbjct: 755 -DQHI 758


>SB_35344| Best HMM Match : PRP1_N (HMM E-Value=0)
          Length = 437

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 25/91 (27%), Positives = 37/91 (40%), Gaps = 1/91 (1%)
 Frame = -3

Query: 749 SFWDKERRTPLRQS-ITTKXSSVTVMPVVFPEDRVLGGFSHLHHKGFTDDMAVNEEVGID 573
           +F+   R TP+  S I +   +      +    +VLGGF        T   A      +D
Sbjct: 183 AFFRSHRFTPVPDSVINSALLAGGTENALSGRQQVLGGFQTPFPGAMTPGYAT-PSADLD 241

Query: 572 LVRSGQVETLAVGSVEARASKSVDEHASVDP 480
           L++ G+     VG    +AS SV     VDP
Sbjct: 242 LIKIGEARKSLVGVKLDQASDSVTGQTVVDP 272


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,275,287
Number of Sequences: 59808
Number of extensions: 475823
Number of successful extensions: 1208
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1099
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1193
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2443309836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)