Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_F12
         (859 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49937-6|CAA90185.2|  453|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z81542-10|CAB04419.4|  411|Caenorhabditis elegans Hypothetical p...    31   1.4  
AF077534-3|AAC26290.1|  389|Caenorhabditis elegans Hypothetical ...    30   1.8  
AF047657-7|AAK18943.1|  424|Caenorhabditis elegans Hypothetical ...    30   2.4  
Z77657-6|CAB01150.2|  607|Caenorhabditis elegans Hypothetical pr...    29   4.2  
Z75541-6|CAA99857.2|  644|Caenorhabditis elegans Hypothetical pr...    28   9.8  
AL132949-25|CAB61103.1|  209|Caenorhabditis elegans Hypothetical...    28   9.8  
AF440800-1|AAL28139.1|  644|Caenorhabditis elegans transcription...    28   9.8  
AF047660-1|AAC04431.1|  900|Caenorhabditis elegans Osm-9 and cap...    28   9.8  

>Z49937-6|CAA90185.2|  453|Caenorhabditis elegans Hypothetical
           protein F14F3.3 protein.
          Length = 453

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
 Frame = +3

Query: 222 ILQPTMFEDIKEIAKEYNIEKSCDKYMNVDVVK-QFMEMYKMGMLPRGETFVHTNELQME 398
           I+ PT      ++    NIE S D  +N+D+ K +F + ++ GM     +      L + 
Sbjct: 272 IMGPTDLNAFDKLKTRENIEMSSDAIVNLDIPKVEFSDGFRDGMKAWNRSVQTWLALYVH 331

Query: 399 EAVKVFRV 422
             VKV RV
Sbjct: 332 SRVKVMRV 339


>Z81542-10|CAB04419.4|  411|Caenorhabditis elegans Hypothetical
           protein F49A5.7 protein.
          Length = 411

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 18/46 (39%), Positives = 29/46 (63%)
 Frame = +1

Query: 484 STEACSSTLLLARASTEPTARVSTCPLLTRSIPTSSLTAMSSVKPL 621
           + EA SST LL+ +ST   +  ST   ++RSI   + TA ++++PL
Sbjct: 91  TNEASSSTKLLSTSSTAEIS--STTRTVSRSIKPETSTASTTIRPL 134


>AF077534-3|AAC26290.1|  389|Caenorhabditis elegans Hypothetical
           protein K07D4.6 protein.
          Length = 389

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
 Frame = +1

Query: 481 GSTEACSS---TLLLARASTEPTARVSTCPLLTRSIPTSSLTAMSSVKPL**R*LKPPRT 651
           G+TE  S+   T   +  +TEPT   ST    T ++PTS+ T  ++           P T
Sbjct: 257 GTTEETSTEPETTTTSTTTTEPTTTTSTTTQTTTTVPTSTSTISTTSTT-----TTTPTT 311

Query: 652 RSSGNTTGITVTDDXLVV 705
            ++  TT  T +DD L V
Sbjct: 312 TTT--TTSTTTSDDLLWV 327


>AF047657-7|AAK18943.1|  424|Caenorhabditis elegans Hypothetical
           protein F37B4.7 protein.
          Length = 424

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +1

Query: 706 IDWRKGVRRSLSQNDVMSYFMEDVDLNTYMYYL 804
           ++W++   + L  N+V     E VD ++YM YL
Sbjct: 183 VEWKEAYEKKLEDNNVQGNLKEIVDQSSYMDYL 215


>Z77657-6|CAB01150.2|  607|Caenorhabditis elegans Hypothetical
           protein F08H9.1 protein.
          Length = 607

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = -3

Query: 464 RSPHENIEVLSVVEDSEDFD 405
           R+P+ENI++L   +DSED D
Sbjct: 581 RAPYENIDLLLSTDDSEDID 600


>Z75541-6|CAA99857.2|  644|Caenorhabditis elegans Hypothetical
           protein F52B5.5a protein.
          Length = 644

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = +3

Query: 258 IAKEYNIEKSCDKYMNVDVVKQ 323
           +  + N+ + C+K+M +DV+KQ
Sbjct: 212 VQSDMNLNEDCEKWMEIDVLKQ 233


>AL132949-25|CAB61103.1|  209|Caenorhabditis elegans Hypothetical
           protein Y53F4B.29 protein.
          Length = 209

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 15/55 (27%), Positives = 28/55 (50%)
 Frame = -3

Query: 560 GQVETLAVGSVEARASKSVDEHASVDPFSHPARSPHENIEVLSVVEDSEDFDGFF 396
           GQV  L+V   E   S ++  + + + F +  ++P E     ++V+  +DF G F
Sbjct: 51  GQVPVLSVDGFEIPQSAAIIRYLA-NKFGYAGKTPEEQAWADAIVDQFKDFMGSF 104


>AF440800-1|AAL28139.1|  644|Caenorhabditis elegans transcription
           factor CEP-1 protein.
          Length = 644

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = +3

Query: 258 IAKEYNIEKSCDKYMNVDVVKQ 323
           +  + N+ + C+K+M +DV+KQ
Sbjct: 212 VQSDMNLNEDCEKWMEIDVLKQ 233


>AF047660-1|AAC04431.1|  900|Caenorhabditis elegans Osm-9 and
           capsaicin receptor-relatedprotein 2 protein.
          Length = 900

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 12/51 (23%), Positives = 28/51 (54%)
 Frame = -1

Query: 385 SLVWTKVSPRGSMPILYISMNCLTTSTFMYLSQLFSMLYSLAISLMSSNMV 233
           + V T +   G   +LY ++     +T +++ ++  +L+ L +S+M  NM+
Sbjct: 709 AFVRTFILTIGEFTVLYRNLALCPANTMVWIGKVVFILFELFVSIMQFNML 759


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,629,272
Number of Sequences: 27780
Number of extensions: 341152
Number of successful extensions: 919
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 919
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2139963672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)