Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_F12
         (859 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g27110.2 68415.m03258 far-red impaired responsive protein, pu...    31   1.3  
At2g27110.1 68415.m03257 far-red impaired responsive protein, pu...    31   1.3  
At2g26890.1 68415.m03226 DNAJ heat shock N-terminal domain-conta...    30   2.3  
At5g65683.1 68418.m08265 zinc finger (C3HC4-type RING finger) fa...    29   4.0  
At4g33880.1 68417.m04807 basic helix-loop-helix (bHLH) family pr...    29   5.2  
At4g31877.1 68417.m04530 expressed protein                             28   9.1  
At2g15860.1 68415.m01818 expressed protein  and genefinder             28   9.1  

>At2g27110.2 68415.m03258 far-red impaired responsive protein,
           putative similar to far-red impaired response protein
           FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282
          Length = 851

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
 Frame = +3

Query: 363 ETFVHT-NELQMEEAVKVFRVLYYAKDFDVFMRTACWMRERINGGMFVYAFTG-ACFH 530
           ETF HT N ++ +     FRV  +  D   ++ T C+   R N    ++  +G  C H
Sbjct: 495 ETFAHTANRIEDDGTTSTFRVANFENDNKAYIVTFCYPEMRANCSCQMFEHSGILCRH 552


>At2g27110.1 68415.m03257 far-red impaired responsive protein,
           putative similar to far-red impaired response protein
           FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282
          Length = 851

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
 Frame = +3

Query: 363 ETFVHT-NELQMEEAVKVFRVLYYAKDFDVFMRTACWMRERINGGMFVYAFTG-ACFH 530
           ETF HT N ++ +     FRV  +  D   ++ T C+   R N    ++  +G  C H
Sbjct: 495 ETFAHTANRIEDDGTTSTFRVANFENDNKAYIVTFCYPEMRANCSCQMFEHSGILCRH 552


>At2g26890.1 68415.m03226 DNAJ heat shock N-terminal domain-containing
            protein contains Pfam profile PF00226: DnaJ domain
          Length = 2554

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -3

Query: 560  GQVETLAVGSVEARASKSVDEHASVDPFSHPARSPHENIEV 438
            G+ ET++ G V+A    S   + S DP S P ++P E + +
Sbjct: 2332 GRRETMSSGEVKAEEIGSDGVNESTDPSSLPGQTPQERVRL 2372


>At5g65683.1 68418.m08265 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profiles PF00097: Zinc
           finger, C3HC4 type (RING finger), PF00092: von
           Willebrand factor type A domain
          Length = 717

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
 Frame = -3

Query: 599 AVNEEVGIDLVRSGQVETLAVGSVEARASKSVDEHASVDPFS-HPARSPHENIEVLSVVE 423
           AVN   G D +R  ++  +  G    R     DE  +  P S     + HE+ E    VE
Sbjct: 197 AVNNNFGSDPIRRPEIREIKTGK-SLRVYND-DEPLAYSPVSLAQINTIHESDEN-DDVE 253

Query: 422 DSEDFDGFF 396
           D +DF GFF
Sbjct: 254 DDDDFPGFF 262


>At4g33880.1 68417.m04807 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 352

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 739 SQNDVMSYFMEDVDLNTYMYYLPHELS 819
           +QN+ M + MEDV +NT  Y +  E S
Sbjct: 99  NQNETMDFGMEDVTINTNSYLVGEETS 125


>At4g31877.1 68417.m04530 expressed protein
          Length = 102

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
 Frame = -1

Query: 400 SSIWSSLVWTKVSPRGSMPILYISMNCLTTSTFM----YLSQLFSML 272
           +S+  SL++   S   S+P+ + S NC+  S F+    ++SQ + ML
Sbjct: 6   ASLACSLLYLSDSGSDSVPVTFSSSNCVPISHFLSHVFFISQRYEML 52


>At2g15860.1 68415.m01818 expressed protein  and genefinder
          Length = 512

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 15/55 (27%), Positives = 26/55 (47%)
 Frame = -3

Query: 575 DLVRSGQVETLAVGSVEARASKSVDEHASVDPFSHPARSPHENIEVLSVVEDSED 411
           DL ++ +  +    +V  +A+KS+ E   VD  S  +    E  E     +DS+D
Sbjct: 57  DLQKAAEDISRNAAAVAEKAAKSIAEMGEVDEDSESSAKEEEKTEEADTEQDSDD 111


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,990,146
Number of Sequences: 28952
Number of extensions: 331104
Number of successful extensions: 828
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 828
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1999652000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)