Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_F11
         (851 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G8.07 |||YEATS family protein|Schizosaccharomyces pombe|ch...    58   2e-09
SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr 2...    28   1.9  
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom...    27   3.4  
SPBC354.14c |vac8||vacuolar protein Vac8|Schizosaccharomyces pom...    27   4.5  
SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces ...    26   5.9  
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   5.9  
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo...    26   7.8  

>SPAC17G8.07 |||YEATS family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 58.0 bits (134), Expect = 2e-09
 Identities = 25/77 (32%), Positives = 43/77 (55%)
 Frame = +3

Query: 444 WRVWVRGANGRDISAFVHKIVFRLHPSSAFVXPKRVLXXPPYEIQEXGCASIEIPIXIYL 623
           WR++V G +G DIS +V K+VF+LH    +  P R +  PP+E+ E G    +I + I+ 
Sbjct: 41  WRIFVEGVDGEDISKWVRKVVFKLH--DTYNNPTRTIESPPFEVIETGWGEFDIMVRIFF 98

Query: 624 KYSSRPKKIQLKYSLQI 674
              +  K +   + L++
Sbjct: 99  APEAHEKALTFYHHLKL 115


>SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 683

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 11/45 (24%), Positives = 20/45 (44%)
 Frame = -2

Query: 271 TRGHRGHMWRAREHSWQEKRRTRLTCVELGADYDTWSRLCVPGWN 137
           T GHR H W  +  S+ + ++  +  +  G    +W+      WN
Sbjct: 424 THGHRIHAWIVKPESFDKSKKYPVAVLIHGGPQGSWTDSWSTRWN 468


>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 736

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 438 LDWRVWVRGANGRDISAFVHKIVFRLHPSSAFV 536
           +D R+ V G NG   S  +  ++ +LHP+S  V
Sbjct: 543 MDSRIGVVGPNGAGKSTMLKLLIEQLHPTSGIV 575


>SPBC354.14c |vac8||vacuolar protein Vac8|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 550

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -3

Query: 702 LGNCSSCCSRSED 664
           +GNC SCC +S+D
Sbjct: 1   MGNCLSCCEKSKD 13


>SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 805

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -1

Query: 836 LVPAPESXFSSAWXWPXRS 780
           L   P S FSS W WP +S
Sbjct: 471 LFSKPMSIFSSRWVWPVKS 489


>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 262

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -3

Query: 459 APTRASPTPAPGRGRSAAVRTRAPLLAICAHTSV 358
           +P +  P PAP + R  A RT +    + + TSV
Sbjct: 217 SPVKKPPPPAPPKPRRLAARTSSNSSGVSSPTSV 250


>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
            Wis4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1401

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +1

Query: 76   FGDSVINKPPQCLHVRYAGLNSTLERRAGS-MYRSP 180
            FG ++   PP    VRY  +   L+  AG+ MY +P
Sbjct: 1180 FGSALYVSPPTDPEVRYEDIQPELQHLAGTPMYMAP 1215


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,330,797
Number of Sequences: 5004
Number of extensions: 67912
Number of successful extensions: 194
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)