Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_F11
         (851 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20570| Best HMM Match : YEATS (HMM E-Value=1.1e-06)                 56   3e-08
SB_9180| Best HMM Match : Lac_bphage_repr (HMM E-Value=6.9)            30   2.1  
SB_8022| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.7  
SB_18867| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_870| Best HMM Match : 7tm_1 (HMM E-Value=5.3e-09)                   29   3.6  
SB_35841| Best HMM Match : rve (HMM E-Value=0.14)                      29   4.8  
SB_10611| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_6460| Best HMM Match : SRCR (HMM E-Value=2e-08)                     29   6.3  

>SB_20570| Best HMM Match : YEATS (HMM E-Value=1.1e-06)
          Length = 135

 Score = 56.4 bits (130), Expect = 3e-08
 Identities = 33/104 (31%), Positives = 51/104 (49%)
 Frame = +3

Query: 369 VRIWLEVGHACEPRRSALGRALALDWRVWVRGANGRDISAFVHKIVFRLHPSSAFVXPKR 548
           V+  LE+GH    R+         DW+V+VRG++  DIS FV K++F LH S  F  PKR
Sbjct: 10  VQAKLELGHTASCRKKLTPEGFTHDWKVFVRGSDHNDISHFVEKVIFNLHES--FPNPKR 67

Query: 549 VLXXPPYEIQEXGCASIEIPIXIYLKYSSRPKKIQLKYSLQIEN 680
                 Y++ +     +  P  I + Y S  K +   + + + N
Sbjct: 68  ACIG--YDVYQV-LTDVVKPKTIVVAYESLKKNLSWWFEIVVVN 108


>SB_9180| Best HMM Match : Lac_bphage_repr (HMM E-Value=6.9)
          Length = 113

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = +2

Query: 581 VRLRFDRNTDSXIPEIQQSA-KEDTT*IQSSDREQHEEQXPSL 706
           VR+R +R  +  + E+  S   E+TT + SSD E  E++ P+L
Sbjct: 4   VRVRRNRQRNLTVDEVLSSVFDENTTDLDSSDSEDGEDELPTL 46


>SB_8022| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 386

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -3

Query: 762 ISARHSCSEGFLEVVVDATRLGNCSSCCSRS 670
           +S RH+ S  +  V V+ TR G CS+  S S
Sbjct: 353 LSTRHAASRNWFSVDVNQTRTGGCSATISSS 383


>SB_18867| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 380

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = +2

Query: 581 VRLRFDRNTDSXIPEIQQSA-KEDTT*IQSSDREQHEEQXPSL 706
           VR+R +R  +  + E+  S   E+TT   SSD E  E++ P+L
Sbjct: 230 VRVRRNRQRNLTVDEVLSSVFDENTTDFDSSDSEDGEDELPTL 272


>SB_870| Best HMM Match : 7tm_1 (HMM E-Value=5.3e-09)
          Length = 334

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 21/56 (37%), Positives = 27/56 (48%)
 Frame = +1

Query: 559 SLRTRSKSXAALRSKYRFXYT*NTAVGQRRYNLNTVFRSRTTRRAVXESRCIYYDF 726
           +LR+RSKS     S + F    +  VG     L  + RSRT RRAV  +  I   F
Sbjct: 16  ALRSRSKSTIIAESVFLFVINISALVGNSLI-LWLILRSRTLRRAVTNTYLIALAF 70


>SB_35841| Best HMM Match : rve (HMM E-Value=0.14)
          Length = 467

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -3

Query: 474 VHWHHAPTRASPTPAPGRGRSAA 406
           V WHH PT+ +P     RG S A
Sbjct: 47  VTWHHVPTKDNPADLGSRGGSVA 69


>SB_10611| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1134

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 26/91 (28%), Positives = 31/91 (34%), Gaps = 6/91 (6%)
 Frame = +2

Query: 209 PSLLLPTVLPGSPHMTSVASCCRCQPPPHALRRFYHILEND*RL------TLAS*YTDVC 370
           P+  LP   PG     S    C  + PP    R +H      R       T +   T  C
Sbjct: 479 PAQQLPGA-PGPERAGSRDGACAPKMPPSGTARRWHAFXXXXRTCPRTWQTASRTCTHAC 537

Query: 371 AHMARSGARVRTAALRPRPGAGVGLARVGAW 463
                SGAR    A RP PG      R+  W
Sbjct: 538 GCRDGSGARPEPPATRPHPGRVEAGRRLAKW 568


>SB_6460| Best HMM Match : SRCR (HMM E-Value=2e-08)
          Length = 234

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 31/118 (26%), Positives = 46/118 (38%)
 Frame = +2

Query: 383 RSGARVRTAALRPRPGAGVGLARVGAWCQWTRHQCFRSQDRLPXSPLLGFCLXKKSAPXA 562
           R+  RVR A  R R    V +   G W    R        ++P SP +        +P  
Sbjct: 70  RNPVRVRLAGSRVRGSGRVEVLYNGVWGTILRSPQILRSPQIPESPQISRSPQIPESPKI 129

Query: 563 SVRDPRVRLRFDRNTDSXIPEIQQSAKEDTT*IQSSDREQHEEQXPSLVASTTTSRNP 736
           S R P++      +  S I E  Q ++      Q S+  Q  E  P +  S+  SR+P
Sbjct: 130 S-RSPQISESPQISESSQISESSQISESP----QISESPQISES-PQISRSSQISRSP 181


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,122,283
Number of Sequences: 59808
Number of extensions: 609188
Number of successful extensions: 1692
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1691
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2419355818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)