Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_F11
         (851 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    26   0.51 
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          23   3.6  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      23   3.6  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    23   4.7  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    23   4.7  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    23   4.7  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   8.2  

>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 25.8 bits (54), Expect = 0.51
 Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +2

Query: 116 MSDMQV*IPPWNAE-PAPCIVVRAQLHTSEPRPSLLLP 226
           M ++ + +P W+ + P PCI+    L T +   SL++P
Sbjct: 21  MMNILMFLPSWDGKMPQPCILKPKPLWTGKQISSLIIP 58


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -1

Query: 650 YLLWPTAVFQVYXNRYFDRS 591
           Y+ +P A++++Y N +FD S
Sbjct: 156 YMKFP-AIYEIYPNYFFDSS 174


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -1

Query: 650 YLLWPTAVFQVYXNRYFDRS 591
           Y+ +P A++++Y N +FD S
Sbjct: 156 YMKFP-AIYEIYPNYFFDSS 174


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 276 LQQEATEVICGEPGSTVGRRSEG 208
           +  E TEV  G  G+T  RR+ G
Sbjct: 275 IDDEPTEVTIGGGGTTSSRRTTG 297


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 276 LQQEATEVICGEPGSTVGRRSEG 208
           +  E TEV  G  G+T  RR+ G
Sbjct: 275 IDDEPTEVTIGGGGTTSSRRTTG 297


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 276 LQQEATEVICGEPGSTVGRRSEG 208
           +  E TEV  G  G+T  RR+ G
Sbjct: 275 IDDEPTEVTIGGGGTTSSRRTTG 297


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -1

Query: 275 CNKRPPRSYVESQGAQLAGEAKDAAHLCGVGRGLRY 168
           CNK   R YV+     ++G+  D AH  G  R   Y
Sbjct: 104 CNKAGVRIYVDVIMNHMSGDRND-AHGTGNSRANTY 138


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 239,079
Number of Sequences: 438
Number of extensions: 5566
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27431202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)