Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_F07
         (854 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    25   0.89 
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    25   0.89 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   4.7  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   6.3  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   8.3  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   8.3  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 25.0 bits (52), Expect = 0.89
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +2

Query: 176 RKLKFHEGKLLKKVDFISWKLDNNISEVKVMKKFCIQKREDYT 304
           R L+  +G  ++ +  I W+L   ++ V +M  FCI K   +T
Sbjct: 191 RTLQISDG--IENIGSIRWELAGTLAVVWIMCYFCIWKGVKWT 231


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 25.0 bits (52), Expect = 0.89
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +2

Query: 176 RKLKFHEGKLLKKVDFISWKLDNNISEVKVMKKFCIQKREDYT 304
           R L+  +G  ++ +  I W+L   ++ V +M  FCI K   +T
Sbjct: 244 RTLQISDG--IENIGSIRWELAGTLAVVWIMCYFCIWKGVKWT 284


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 630 PPSXXXPPPPP 662
           PP    PPPPP
Sbjct: 338 PPKPAPPPPPP 348


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 11/28 (39%), Positives = 11/28 (39%), Gaps = 4/28 (14%)
 Frame = +3

Query: 783 PXPXPXPPXXPPXP----PXPPXXXPPP 854
           P P P P   P  P    P  P   PPP
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPP 48



 Score = 21.8 bits (44), Expect = 8.3
 Identities = 9/26 (34%), Positives = 9/26 (34%)
 Frame = +1

Query: 772 PXPPPXXXPXPPXXPPXPXXPPXXXP 849
           P  P    P  P   P P  PP   P
Sbjct: 31  PQAPQRGSPPNPSQGPPPGGPPGAPP 56


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = +2

Query: 281 IQKREDYTKYNKLSRDIRE 337
           +++ E+Y  Y KL R++R+
Sbjct: 392 VKQVEEYMAYRKLPREMRQ 410


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = +2

Query: 281 IQKREDYTKYNKLSRDIRE 337
           +++ E+Y  Y KL R++R+
Sbjct: 360 VKQVEEYMAYRKLPREMRQ 378


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 241,340
Number of Sequences: 438
Number of extensions: 12386
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27552579
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)