Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_F06
         (888 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P03087 Cluster: Capsid protein VP1; n=1927; Polyomaviru...    41   0.048
UniRef50_Q2C3D2 Cluster: Chitinase, containing dual catalytic do...    35   2.4  
UniRef50_P12907 Cluster: Capsid protein VP1; n=79; Polyomavirus|...    33   9.7  

>UniRef50_P03087 Cluster: Capsid protein VP1; n=1927;
           Polyomavirus|Rep: Capsid protein VP1 - Simian virus 40
           (SV40)
          Length = 364

 Score = 40.7 bits (91), Expect = 0.048
 Identities = 17/18 (94%), Positives = 17/18 (94%)
 Frame = +2

Query: 461 DPDMIRYIDEFGQTTTXM 514
           DPDMIRYIDEFGQTTT M
Sbjct: 346 DPDMIRYIDEFGQTTTRM 363


>UniRef50_Q2C3D2 Cluster: Chitinase, containing dual catalytic
           domains; n=3; Vibrionaceae|Rep: Chitinase, containing
           dual catalytic domains - Photobacterium sp. SKA34
          Length = 399

 Score = 35.1 bits (77), Expect = 2.4
 Identities = 17/43 (39%), Positives = 23/43 (53%)
 Frame = +1

Query: 106 MKFTVAFALIAMFAIVAVNSQENGGDSPDGEVAPGVDPVKVVD 234
           MK+T+  ALIA  ++ A NS  N  D   G VA    P K+ +
Sbjct: 1   MKYTLLAALIAATSLTACNSSSNSSDDYSGYVAQEPKPAKITE 43


>UniRef50_P12907 Cluster: Capsid protein VP1; n=79;
           Polyomavirus|Rep: Capsid protein VP1 - Murine
           polyomavirus (strain Crawford small-plaque) (MPyV)
          Length = 384

 Score = 33.1 bits (72), Expect = 9.7
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = +2

Query: 461 DPDMIRYIDEFGQTTTXMP 517
           DPDM RY+D FG+T T  P
Sbjct: 364 DPDMTRYVDRFGKTKTVFP 382


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 648,376,709
Number of Sequences: 1657284
Number of extensions: 10207760
Number of successful extensions: 20960
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 20265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20937
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 79932179145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)