BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= MFBP03_F_F05 (862 letters) Database: tribolium 336 sequences; 122,585 total letters Searching.......................................................done Score E Sequences producing significant alignments: (bits) Value AY887136-1|AAW78361.1| 580|Tribolium castaneum vasa RNA helicas... 28 0.11 DQ342040-1|ABC69932.1| 822|Tribolium castaneum STIP protein. 24 1.8 EF125547-1|ABL73931.1| 255|Tribolium castaneum obstractor D pro... 23 3.1 >AY887136-1|AAW78361.1| 580|Tribolium castaneum vasa RNA helicase protein. Length = 580 Score = 27.9 bits (59), Expect = 0.11 Identities = 11/17 (64%), Positives = 11/17 (64%) Frame = +2 Query: 416 GGGGGGGXXGXXGXGGG 466 GGG GGG G G GGG Sbjct: 92 GGGRGGGRDGDRGDGGG 108 Score = 23.4 bits (48), Expect = 2.3 Identities = 11/28 (39%), Positives = 11/28 (39%) Frame = -1 Query: 679 GGXXGGGXGXXXGGGGGGXXGXXAXXPP 596 GG GGG G GGG PP Sbjct: 92 GGGRGGGRDGDRGDGGGEEKKREFYIPP 119 Score = 22.2 bits (45), Expect = 5.4 Identities = 11/19 (57%), Positives = 11/19 (57%) Frame = +2 Query: 419 GGGGGGXXGXXGXGGGGGG 475 GGG GG G G G GGG Sbjct: 92 GGGRGG--GRDGDRGDGGG 108 >DQ342040-1|ABC69932.1| 822|Tribolium castaneum STIP protein. Length = 822 Score = 23.8 bits (49), Expect = 1.8 Identities = 7/7 (100%), Positives = 7/7 (100%) Frame = -2 Query: 435 PPPPPPP 415 PPPPPPP Sbjct: 731 PPPPPPP 737 Score = 23.8 bits (49), Expect = 1.8 Identities = 7/7 (100%), Positives = 7/7 (100%) Frame = -1 Query: 433 PPPPPPP 413 PPPPPPP Sbjct: 731 PPPPPPP 737 Score = 23.0 bits (47), Expect = 3.1 Identities = 7/8 (87%), Positives = 7/8 (87%) Frame = -3 Query: 437 NPPPPPPP 414 N PPPPPP Sbjct: 729 NAPPPPPP 736 >EF125547-1|ABL73931.1| 255|Tribolium castaneum obstractor D protein. Length = 255 Score = 23.0 bits (47), Expect = 3.1 Identities = 9/19 (47%), Positives = 9/19 (47%) Frame = -1 Query: 466 PPPXXXXXXXTPPPPPPPE 410 PP T PPPPP E Sbjct: 202 PPTEDCDVPSTIPPPPPEE 220 Score = 21.4 bits (43), Expect = 9.5 Identities = 8/17 (47%), Positives = 8/17 (47%) Frame = -2 Query: 468 PPPPXPXXPXXPPPPPP 418 PP P PPPPP Sbjct: 202 PPTEDCDVPSTIPPPPP 218 Database: tribolium Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 122,585 Number of sequences in database: 336 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 181,466 Number of Sequences: 336 Number of extensions: 6129 Number of successful extensions: 33 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 7 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 22 length of database: 122,585 effective HSP length: 56 effective length of database: 103,769 effective search space used: 23866870 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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