Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_F05
         (862 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    28   0.11 
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          24   1.8  
EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    23   3.1  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 27.9 bits (59), Expect = 0.11
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = +2

Query: 416 GGGGGGGXXGXXGXGGG 466
           GGG GGG  G  G GGG
Sbjct: 92  GGGRGGGRDGDRGDGGG 108



 Score = 23.4 bits (48), Expect = 2.3
 Identities = 11/28 (39%), Positives = 11/28 (39%)
 Frame = -1

Query: 679 GGXXGGGXGXXXGGGGGGXXGXXAXXPP 596
           GG  GGG     G GGG         PP
Sbjct: 92  GGGRGGGRDGDRGDGGGEEKKREFYIPP 119



 Score = 22.2 bits (45), Expect = 5.4
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = +2

Query: 419 GGGGGGXXGXXGXGGGGGG 475
           GGG GG  G  G  G GGG
Sbjct: 92  GGGRGG--GRDGDRGDGGG 108


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -2

Query: 435 PPPPPPP 415
           PPPPPPP
Sbjct: 731 PPPPPPP 737



 Score = 23.8 bits (49), Expect = 1.8
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = -1

Query: 433 PPPPPPP 413
           PPPPPPP
Sbjct: 731 PPPPPPP 737



 Score = 23.0 bits (47), Expect = 3.1
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -3

Query: 437 NPPPPPPP 414
           N PPPPPP
Sbjct: 729 NAPPPPPP 736


>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = -1

Query: 466 PPPXXXXXXXTPPPPPPPE 410
           PP        T PPPPP E
Sbjct: 202 PPTEDCDVPSTIPPPPPEE 220



 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/17 (47%), Positives = 8/17 (47%)
 Frame = -2

Query: 468 PPPPXPXXPXXPPPPPP 418
           PP      P   PPPPP
Sbjct: 202 PPTEDCDVPSTIPPPPP 218


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,466
Number of Sequences: 336
Number of extensions: 6129
Number of successful extensions: 33
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23866870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)