Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_F04
         (860 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi...    31   0.21 
SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyc...    30   0.49 
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ...    27   2.6  
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc...    27   2.6  
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    27   3.4  
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c...    27   3.4  
SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit Prp31|S...    27   4.5  
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni...    26   6.0  
SPAC694.04c |||conserved eukaryotic protein|Schizosaccharomyces ...    26   7.9  

>SPCC576.13 |swc5||chromatin remodeling complex subunit
           Swc5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 215

 Score = 31.1 bits (67), Expect = 0.21
 Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
 Frame = +3

Query: 168 LEEQLYNSVVVADYDSAVE--KSKH--LYEEKKSEVITNVVNKLIRNNKMNCMEYAYQLW 335
           L E   +  V  D +S  E  K KH  + + +KS + ++   K+++ NK+N +E A Q W
Sbjct: 110 LAESNSSVAVEGDENSYAETPKKKHSLIRKRRKSPLDSSSAQKVLKKNKLNTLEQAQQNW 169


>SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 29.9 bits (64), Expect = 0.49
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = +2

Query: 521 VSWKLIALWENNKVYFKILNTERNQYLVLXVGTNWNG 631
           + +K I L++NN+   KILN  R    V+ VGT  NG
Sbjct: 254 IFFKCIPLFKNNEEAEKILNVNRLLDRVMFVGTKVNG 290


>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 774

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +3

Query: 249 KKSEVITNVVNKLIRNNKMNCMEYAYQLWLQGL 347
           K+   +T+  NKL+ ++  +  +YAY L LQ L
Sbjct: 35  KREAQLTDTPNKLLTDHDQSASDYAYALKLQQL 67


>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 776

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +3

Query: 177 QLYNSVVVADYDSAVEKSKHLYEEKKS 257
           QL N     DY+   E++K LY+E+KS
Sbjct: 184 QLQNENFKDDYEKIKEENKRLYKERKS 210


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1428

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -2

Query: 424 VHKLNRVFGEDKSELNWETIPDDV 353
           +H +     EDKS+L +ETIPD V
Sbjct: 9   IHPVRHSKYEDKSKLPFETIPDPV 32


>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 807

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
 Frame = -3

Query: 702 YLAGCRYQWALKLWTLLT---PKAIWSPFQLVPTXN 604
           +LA   +   LK+W L T    K+I  PF+ +PT N
Sbjct: 198 FLASQSFDHTLKVWKLSTFGVEKSIAKPFEQMPTGN 233


>SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit
           Prp31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 518

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +3

Query: 369 VSQLSSDLSSPKTRLSLCTSATV 437
           VS L +DL + KT+LS   SATV
Sbjct: 166 VSSLLNDLDNSKTKLSFLPSATV 188


>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
            Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1227

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
 Frame = +3

Query: 243  EEKKSEVITNVVNKLIRNNKMNCMEYAYQLWLQGLQGTSSGIVSQLSSD--LSSPKTRLS 416
            E ++  VI +  + L+++  MNC +YA Q W+    G+   I+S +S +   S+ + R  
Sbjct: 1111 EMERDAVIGHGTSFLMQDRLMNCSDYA-QSWVCRDCGSIISIMSTISMNGVGSASEVRCR 1169

Query: 417  LCTSATVSL 443
             C    + L
Sbjct: 1170 SCAKPALGL 1178


>SPAC694.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 324

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
 Frame = +3

Query: 183 YNSVVVADYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNK--MNCMEYAYQLWLQGLQGT 356
           +N      Y + +  +  +Y+    EVI  V+ +L  N +      E  YQ +++GL   
Sbjct: 71  FNDTFSPKYSTRLSSAGLIYKHFGREVIHAVLPQLKINEQDLETLYEKVYQSFVEGLDAN 130

Query: 357 SSGIVSQLSSDLSSPKTRLSL 419
            +GI +  +    S K  +SL
Sbjct: 131 DNGISAYPAGLKPSFKAAMSL 151


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,051,745
Number of Sequences: 5004
Number of extensions: 56199
Number of successful extensions: 207
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)