Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_F04
         (860 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1170 + 34663853-34663928,34664038-34664078,34664317-346643...    32   0.51 
03_01_0300 + 2350232-2352274,2352349-2352669,2352752-2352838,235...    29   6.3  
12_01_0378 - 2946916-2947590                                           28   8.3  

>02_05_1170 + 34663853-34663928,34664038-34664078,34664317-34664386,
            34664499-34664647,34664784-34664879,34665406-34665476,
            34665637-34665698,34665778-34665841,34665950-34666034,
            34666129-34666255,34666381-34666454,34666539-34666599,
            34666683-34666771,34666897-34667206,34667763-34667815,
            34668299-34668370,34668648-34668914,34669015-34669047,
            34669163-34669245,34669522-34669594,34669834-34670170,
            34670302-34670633,34670816-34671135,34671261-34671612,
            34671691-34671906
          Length = 1170

 Score = 32.3 bits (70), Expect = 0.51
 Identities = 40/136 (29%), Positives = 57/136 (41%), Gaps = 23/136 (16%)
 Frame = +3

Query: 75   LDAPKMKPAIVILCLFVASLYAADSDVPNDILE------EQLYNSV-VVADYDSAVEKSK 233
            LD P  + A ++L  F   L++ DS  P  IL       E   NS   V D   A E S 
Sbjct: 646  LDCPLFRNARIVLDDFEVILHSPDSIAPVGILHPLKFHLEHKPNSFGTVGDSAIAQENSS 705

Query: 234  HLYE----------EKKSEVITNVVNKLIRNNKMNCME------YAYQLWLQGLQGTSSG 365
            +LYE          EKK E ++ V       N   C+       ++   W+Q   GTS G
Sbjct: 706  YLYEVDGAIAHSDVEKKQETLSPVTTVDACTNIDLCISKTGKKLFSIGCWIQDPCGTSEG 765

Query: 366  IVSQLSSDLSSPKTRL 413
            + + L + LS  + +L
Sbjct: 766  LKTDLVAVLSRIENQL 781


>03_01_0300 + 2350232-2352274,2352349-2352669,2352752-2352838,
            2353031-2353708,2353800-2353964,2354139-2354433,
            2354581-2354795,2354885-2355190,2355269-2355332,
            2355426-2355665,2355783-2355886
          Length = 1505

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 15/59 (25%), Positives = 29/59 (49%)
 Frame = +1

Query: 40   DLAVRSCGNTQDSTLQR*SPL*LFYVFSWHLCMLQIPTSLTTFWRSSFTIASSSPITTV 216
            D+A R  G    +T+Q    + +    +W + +L +P ++   W   + IASS  +T +
Sbjct: 1054 DIAFR-LGGFASTTIQLLGIVAVMSKVTWQVLILIVPMAVACMWMQRYYIASSRELTRI 1111


>12_01_0378 - 2946916-2947590
          Length = 224

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 14/47 (29%), Positives = 27/47 (57%)
 Frame = +3

Query: 72  GLDAPKMKPAIVILCLFVASLYAADSDVPNDILEEQLYNSVVVADYD 212
           G+    ++P +++L    ASL AA++ VP    + ++  +VV  D+D
Sbjct: 87  GVHYDAIRPRLLLLLAGGASLGAANATVPGVFHQPRMSTTVVAIDFD 133


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,790,286
Number of Sequences: 37544
Number of extensions: 395393
Number of successful extensions: 1112
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1091
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1112
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)