Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_F04
         (860 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45893| Best HMM Match : Arc (HMM E-Value=3.3)                       29   4.9  
SB_39863| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.4  
SB_17366| Best HMM Match : Filament (HMM E-Value=0.14)                 29   6.4  
SB_1524| Best HMM Match : 7tm_6 (HMM E-Value=0.51)                     29   6.4  
SB_25182| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  
SB_13713| Best HMM Match : zf-C2H2 (HMM E-Value=3.8e-23)               28   8.5  

>SB_45893| Best HMM Match : Arc (HMM E-Value=3.3)
          Length = 186

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +2

Query: 248 EEERSHHKCREQTDTKQQDELHGVRLSTLAPGAPRDIVRDC 370
           +EERS    R   D  ++  +H VRL +  PG   + V DC
Sbjct: 115 DEERSQSSVRHGPDLTEELAVHAVRLGSRLPGRSSNAV-DC 154


>SB_39863| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2978

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = +2

Query: 248 EEERSHHKCREQTDTKQQDELHGVRLSTLAPGAPRDIVRDCFPVEFRLIFA 400
           E++ S+ +     D K +D+      +T+ P  PRD   DC  V F  I +
Sbjct: 42  EQKASNLQQNFVEDQKMEDKEVSKENATIPPPPPRDFDEDCLTVVFHAILS 92


>SB_17366| Best HMM Match : Filament (HMM E-Value=0.14)
          Length = 306

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 20/99 (20%), Positives = 44/99 (44%)
 Frame = +3

Query: 147 SDVPNDILEEQLYNSVVVADYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCMEYAY 326
           S++  +++  +  NS + + +     + +  +E +K E+   ++++  +      +E  +
Sbjct: 36  SELREEVILLRKENSQIESTFVEKNAELRQHFEIEKEELNRKLIHE--KEELRYSLEAEF 93

Query: 327 QLWLQGLQGTSSGIVSQLSSDLSSPKTRLSLCTSATVSL 443
                    T SG++ QL  DL   KTR     SA + L
Sbjct: 94  SQKFVNESATQSGVIQQLDGDLRMMKTRCGELESAMLEL 132


>SB_1524| Best HMM Match : 7tm_6 (HMM E-Value=0.51)
          Length = 407

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = +2

Query: 302 DELHGVRLSTLAPGAPRDIVRDCFPVEFRLIFAE--NAIKLMYKRDGLALTLSNDVQGD 472
           D +H   LS +  GAP   +     + F +      +A ++ +K DGL  +++N V+GD
Sbjct: 301 DAMHFSLLSRVFRGAPAGYIVTVLFMNFLIFLVPCVSASRVTWKCDGLLYSINNRVKGD 359


>SB_25182| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 58

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 282 KLIRNNKMNCMEYAYQLWLQGLQGTS 359
           +L  NN+M    +A+  WL+G QG+S
Sbjct: 17  RLHNNNRMLICTFAHSTWLKGRQGSS 42


>SB_13713| Best HMM Match : zf-C2H2 (HMM E-Value=3.8e-23)
          Length = 1084

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 8/23 (34%), Positives = 18/23 (78%)
 Frame = -2

Query: 832 DFRITLPVVSPGPCGDPEGSTVL 764
           ++++T PV++ GP G P+G+ ++
Sbjct: 144 EYQLTQPVIAMGPGGHPQGAAII 166


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,417,177
Number of Sequences: 59808
Number of extensions: 449116
Number of successful extensions: 1268
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1268
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2455286845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)