Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_F04
         (860 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g60170.1 68414.m06778 pre-mRNA processing ribonucleoprotein b...    33   0.18 
At5g13790.1 68418.m01608 floral homeotic protein AGL-15 (AGL15)        28   9.2  
At2g24740.1 68415.m02955 SET domain-containing protein (SUVH8) i...    28   9.2  

>At1g60170.1 68414.m06778 pre-mRNA processing ribonucleoprotein
           binding region-containing protein similar to U4/U6
           snRNP-associated 61 kDa protein [Homo sapiens]
           GI:18249847; contains Pfam profile PF01798: Putative
           snoRNA binding domain
          Length = 485

 Score = 33.5 bits (73), Expect = 0.18
 Identities = 18/67 (26%), Positives = 32/67 (47%)
 Frame = +3

Query: 75  LDAPKMKPAIVILCLFVASLYAADSDVPNDILEEQLYNSVVVADYDSAVEKSKHLYEEKK 254
           +D   + P+ +I+ + V +L    S +P D+L++ L       D DSA +K     E K 
Sbjct: 154 VDLADLLPSAIIMVVSVTALTTKGSALPEDVLQKVLEACDRALDLDSARKKVLEFVESKM 213

Query: 255 SEVITNV 275
             +  N+
Sbjct: 214 GSIAPNL 220


>At5g13790.1 68418.m01608 floral homeotic protein AGL-15 (AGL15) 
          Length = 268

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -3

Query: 417 SLIAFSAKISLNSTGKQSRTMSLGAPGAKVDRRT 316
           +LI   +K SL +T   + T+ LG PG   DRRT
Sbjct: 192 ALINHDSKCSLQNTDSDT-TLQLGLPGEAHDRRT 224


>At2g24740.1 68415.m02955 SET domain-containing protein (SUVH8)
           identical to SUVH8 [Arabidopsis thaliana] GI:13517757;
           contains Pfam profiles PF00856: SET domain, PF05033:
           Pre-SET motif, PF02182: YDG/SRA domain
          Length = 755

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -2

Query: 682 PVGSETMDAVDSEGHMVAVPVSADSQ-YQVLVTFSVQD 572
           PV  E  DAV+ E H  ++P  A  Q   +L  F+++D
Sbjct: 72  PVHRERSDAVNEEAHATSIPPHAPPQTLWLLDNFNIED 109


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,287,749
Number of Sequences: 28952
Number of extensions: 307488
Number of successful extensions: 1006
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 977
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1006
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2009406400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)