Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP03_F_F03
(856 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE... 55 2e-06
UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3; ... 54 5e-06
UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ... 52 2e-05
UniRef50_P03087 Cluster: Capsid protein VP1; n=1927; Polyomaviru... 45 0.002
UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma... 41 0.035
UniRef50_P03023 Cluster: Lactose operon repressor; n=24; Enterob... 40 0.080
UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep: Alpha-h... 38 0.43
UniRef50_A2SSD8 Cluster: Putative uncharacterized protein; n=1; ... 34 5.3
UniRef50_Q8I2J6 Cluster: Putative uncharacterized protein PFI155... 33 9.2
UniRef50_A5K1D3 Cluster: Putative uncharacterized protein; n=1; ... 33 9.2
>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
Myxococcus xanthus
Length = 486
Score = 55.2 bits (127), Expect = 2e-06
Identities = 31/57 (54%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Frame = +2
Query: 491 CINESANARGEAVCVLGALPLPRSLTRCARSFGCGERYXL-TQRR*YGYPQNXGITQ 658
CI + A AR EAV VL ALPL RS TRC RS GCG + R YG PQ G+ Q
Sbjct: 266 CIRDPATARSEAVWVLVALPLLRSRTRCVRSVGCGGAVSAHSPGRPYGDPQPQGMAQ 322
>UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3;
root|Rep: Putative uncharacterized protein - Escherichia
coli
Length = 61
Score = 54.0 bits (124), Expect = 5e-06
Identities = 25/32 (78%), Positives = 25/32 (78%)
Frame = -1
Query: 673 LTXSFLRYPXILWITVLPPLSEXIPLAAAERP 578
LT SF YP ILWITVLPPLSE PLAA ERP
Sbjct: 25 LTCSFRLYPLILWITVLPPLSELTPLAAVERP 56
>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
Escherichia coli|Rep: Putative uncharacterized protein -
Escherichia coli
Length = 147
Score = 52.0 bits (119), Expect = 2e-05
Identities = 23/33 (69%), Positives = 25/33 (75%)
Frame = +2
Query: 515 RGEAVCVLGALPLPRSLTRCARSFGCGERYXLT 613
R +C G +PLPRSLTR ARSFGCGERY LT
Sbjct: 26 RVSRICDTGDIPLPRSLTRYARSFGCGERYRLT 58
>UniRef50_P03087 Cluster: Capsid protein VP1; n=1927;
Polyomavirus|Rep: Capsid protein VP1 - Simian virus 40
(SV40)
Length = 364
Score = 45.2 bits (102), Expect = 0.002
Identities = 19/19 (100%), Positives = 19/19 (100%)
Frame = +2
Query: 293 DPDMIRYIDEFGQTTTRMQ 349
DPDMIRYIDEFGQTTTRMQ
Sbjct: 346 DPDMIRYIDEFGQTTTRMQ 364
>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
Magnoliophyta|Rep: Putative reverse transcriptase -
Zingiber officinale (Ginger)
Length = 49
Score = 41.1 bits (92), Expect = 0.035
Identities = 22/41 (53%), Positives = 26/41 (63%)
Frame = +3
Query: 417 INKLTTTIAFILCFRFRGEVWEVFSALMNRPTRGERRFAYW 539
+++LT L RF V +ALMNRPTRGERRFAYW
Sbjct: 1 MSELTHINCVALTARFPVGKPVVPAALMNRPTRGERRFAYW 41
>UniRef50_P03023 Cluster: Lactose operon repressor; n=24;
Enterobacteriaceae|Rep: Lactose operon repressor -
Escherichia coli (strain K12)
Length = 360
Score = 39.9 bits (89), Expect = 0.080
Identities = 19/24 (79%), Positives = 21/24 (87%)
Frame = -2
Query: 561 ERGSGRAPNTQTASPRALADSLMQ 490
+R + APNTQTASPRALADSLMQ
Sbjct: 325 KRKTTLAPNTQTASPRALADSLMQ 348
>UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep:
Alpha-hemolysin - Aeromonas hydrophila
Length = 59
Score = 37.5 bits (83), Expect = 0.43
Identities = 17/17 (100%), Positives = 17/17 (100%)
Frame = +1
Query: 616 KAVIRLSTESGDNAGKN 666
KAVIRLSTESGDNAGKN
Sbjct: 42 KAVIRLSTESGDNAGKN 58
>UniRef50_A2SSD8 Cluster: Putative uncharacterized protein; n=1;
Methanocorpusculum labreanum Z|Rep: Putative
uncharacterized protein - Methanocorpusculum labreanum
(strain ATCC 43576 / DSM 4855 / Z)
Length = 109
Score = 33.9 bits (74), Expect = 5.3
Identities = 21/55 (38%), Positives = 28/55 (50%)
Frame = -1
Query: 451 KMNAIVVVNLFIAAYNGYK*SNSITNFTNKAFFSLHSSCGLSKLINVSYHVWIQL 287
+MNA V + FIAA + +T + AFF L S G ++VSY VW L
Sbjct: 27 RMNAWVDLAAFIAAV-----ATCVTGYVLWAFFPLGSGRGAMNFLDVSYQVWYDL 76
>UniRef50_Q8I2J6 Cluster: Putative uncharacterized protein PFI1555w;
n=1; Plasmodium falciparum 3D7|Rep: Putative
uncharacterized protein PFI1555w - Plasmodium falciparum
(isolate 3D7)
Length = 185
Score = 33.1 bits (72), Expect = 9.2
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = -1
Query: 211 INI*FHLYYIYILMYICSVFVK 146
+NI H+Y IYI +YIC+ FV+
Sbjct: 161 VNIILHIYIIYIYIYICATFVQ 182
>UniRef50_A5K1D3 Cluster: Putative uncharacterized protein; n=1;
Plasmodium vivax|Rep: Putative uncharacterized protein -
Plasmodium vivax
Length = 1265
Score = 33.1 bits (72), Expect = 9.2
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +3
Query: 720 PXVFSXXLRPPXTSITKTHPPSPXVGQXPTRDYKDPXXSPRKAPP 854
P V + + PP + +K PPS + PT ++P P KA P
Sbjct: 787 PKVPAPKVTPPTAAASKVTPPSAAAPKVPTPKVEEPKAGPSKAVP 831
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 686,164,522
Number of Sequences: 1657284
Number of extensions: 11988276
Number of successful extensions: 31189
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 28269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30930
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 75423184424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -