Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_F03
         (856 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z98866-26|CAM33505.1|  559|Caenorhabditis elegans Hypothetical p...    29   3.2  
AF106580-3|AAC78205.1|  881|Caenorhabditis elegans Temporarily a...    29   5.6  

>Z98866-26|CAM33505.1|  559|Caenorhabditis elegans Hypothetical
           protein Y49E10.29 protein.
          Length = 559

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +3

Query: 747 PPXTSITKTHPPSPXVGQXPTRDY-KDPXXSPRKAPP 854
           P  T   +  PP P V Q PTR     P  +P++APP
Sbjct: 300 PQQTPPVQQAPPKPAVQQAPTRAAPAPPKPAPQQAPP 336


>AF106580-3|AAC78205.1|  881|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 268 protein.
          Length = 881

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = +3

Query: 747 PPXTSITKTHPPSPXVG-QXPTRDYKDPXXSPRKAP 851
           PP     K  PP P +G + P++  K P   P++ P
Sbjct: 89  PPPPPTLKAPPPPPILGLKTPSKSLKTPTPRPKECP 124


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,890,422
Number of Sequences: 27780
Number of extensions: 294695
Number of successful extensions: 735
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2129473654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)