Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_F03
         (856 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   6.3  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   6.3  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          22   8.3  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   8.3  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    22   8.3  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    22   8.3  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = +2

Query: 113 RIWLPVLFFVAFNEY*TNVHQNIYIIKMKLYIDFIKNISCL 235
           R+W+P LFF   NE   + H    II   +YI    N S L
Sbjct: 114 RVWMPDLFF--SNEKEGHFHN---IIMPNVYIRIFPNGSVL 149


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = +2

Query: 113 RIWLPVLFFVAFNEY*TNVHQNIYIIKMKLYIDFIKNISCL 235
           R+W+P LFF   NE   + H    II   +YI    N S L
Sbjct: 114 RVWMPDLFF--SNEKEGHFHN---IIMPNVYIRIFPNGSVL 149


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 184 YNKDEIIY 207
           YNKDEIIY
Sbjct: 439 YNKDEIIY 446


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 184 YNKDEIIY 207
           YNKDEIIY
Sbjct: 439 YNKDEIIY 446


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 13/42 (30%), Positives = 17/42 (40%)
 Frame = +2

Query: 149 NEY*TNVHQNIYIIKMKLYIDFIKNISCLXXXXXXYRGRGSP 274
           N Y  N + N      KLY ++I NI  +      Y G   P
Sbjct: 99  NNYNNNYNNNYNNNYKKLYKNYIINIEQIPVPVPVYYGNFPP 140


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 13/42 (30%), Positives = 17/42 (40%)
 Frame = +2

Query: 149 NEY*TNVHQNIYIIKMKLYIDFIKNISCLXXXXXXYRGRGSP 274
           N Y  N + N      KLY ++I NI  +      Y G   P
Sbjct: 99  NNYNNNYNNNYNNNYKKLYKNYIINIEQIPVPVPVYYGNFPP 140


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,968
Number of Sequences: 438
Number of extensions: 4178
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27552579
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)