Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_F03
         (856 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g56340.1 68418.m07032 zinc finger (C3HC4-type RING finger) fa...    33   0.32 
At4g14910.1 68417.m02291 imidazoleglycerol-phosphate dehydratase...    32   0.56 
At3g22120.1 68416.m02792 protease inhibitor/seed storage/lipid t...    30   2.3  
At2g15880.1 68415.m01820 leucine-rich repeat family protein / ex...    29   3.9  
At1g24220.1 68414.m03054 paired amphipathic helix repeat-contain...    29   3.9  
At4g18670.1 68417.m02762 leucine-rich repeat family protein / ex...    29   5.2  
At5g14920.1 68418.m01750 gibberellin-regulated family protein si...    28   6.9  
At3g20830.1 68416.m02634 protein kinase family protein contains ...    28   6.9  
At2g27380.1 68415.m03302 proline-rich family protein contains pr...    28   6.9  

>At5g56340.1 68418.m07032 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 396

 Score = 32.7 bits (71), Expect = 0.32
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -1

Query: 742 RXXEKTXGNGXXFTVPWPFAGLWLTXS 662
           R  E   GNG  F+ PWPF+GL+ + S
Sbjct: 345 REDEVRSGNGRRFSFPWPFSGLFSSSS 371


>At4g14910.1 68417.m02291 imidazoleglycerol-phosphate dehydratase,
           putative similar to SP|P34047
           Imidazoleglycerol-phosphate dehydratase 1 (EC 4.2.1.19)
           (IGPD 1) {Arabidopsis thaliana}; contains Pfam profile
           PF00475: imidazoleglycerol-phosphate dehydratase
          Length = 272

 Score = 31.9 bits (69), Expect = 0.56
 Identities = 16/45 (35%), Positives = 20/45 (44%)
 Frame = +3

Query: 720 PXVFSXXLRPPXTSITKTHPPSPXVGQXPTRDYKDPXXSPRKAPP 854
           P + S  L PP TSI  +HPP P      ++    P  S    PP
Sbjct: 14  PNLSSRALLPPRTSIASSHPPPPRFLVMNSQSQHRPSISCASPPP 58


>At3g22120.1 68416.m02792 protease inhibitor/seed storage/lipid
           transfer protein (LTP) family protein similar to
           SP|Q00451|PRF1_LYCES 36.4 kDa proline-rich protein
           Lycopersicon esculentum, proline-rich cell wall protein
           [Medicago sativa] GI:3818416; contains Pfam profile
           PF00234 Protease inhibitor/seed storage/LTP family
          Length = 334

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 20/66 (30%), Positives = 25/66 (37%), Gaps = 7/66 (10%)
 Frame = +3

Query: 678 RPAKGXGTVKXXPLPXVFSXXLRPPXTSI------TKTHP-PSPXVGQXPTRDYKDPXXS 836
           +P     TVK  P P       +PP          TK HP P P + + PT+        
Sbjct: 71  KPHPKPPTVKPHPKPPTVKPHPKPPTVKPPHPKPPTKPHPHPKPPIVKPPTKPPPSTPKP 130

Query: 837 PRKAPP 854
           P K PP
Sbjct: 131 PTKPPP 136


>At2g15880.1 68415.m01820 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 727

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 15/47 (31%), Positives = 18/47 (38%)
 Frame = +3

Query: 714 PLPXVFSXXLRPPXTSITKTHPPSPXVGQXPTRDYKDPXXSPRKAPP 854
           P P V+S    P  +     H P P V   P   Y  P   P  +PP
Sbjct: 580 PPPPVYSPPPPPVHSPPPPVHSPPPPVHSPPPPVYSPPPPPPVHSPP 626


>At1g24220.1 68414.m03054 paired amphipathic helix repeat-containing
           protein weak similarity to transcription co-repressor
           Sin3 [Xenopus laevis] GI:4960210; contains Pfam profile
           PF02671: Paired amphipathic helix repeat
          Length = 744

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
 Frame = -1

Query: 649 PXILWITVLPPLSEXIPLAAAERPXXXXXXXXXXXXXQYANRLSPRVGRFI--NAEKTSH 476
           P  L IT++PP +     + A++P              + N+L P+  R I   AEK +H
Sbjct: 264 PVKLKITIIPPKARRTIPSEADKPTHTDELN-------FMNKLPPKRRRTIPSEAEKPTH 316

Query: 475 TSPLNLKHKM 446
           T  LN  +K+
Sbjct: 317 TDELNFMNKL 326


>At4g18670.1 68417.m02762 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 839

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +2

Query: 731 FXXPPPPLXEHHKNPPXKSXGGPXP 805
           +  PPPP+  H + PP     GP P
Sbjct: 799 YSPPPPPVIHHSQPPPPPIYEGPLP 823


>At5g14920.1 68418.m01750 gibberellin-regulated family protein
           similar to SP|P46689 Gibberellin-regulated protein 1
           precursor {Arabidopsis thaliana}; contains Pfam profile
           PF02704: Gibberellin regulated protein
          Length = 275

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +3

Query: 741 LRPPXTSITKTHPPSPXVGQXPTRDYKDPXXSPRKAPP 854
           ++PP T   ++ P  P   + PT   K P  +P   PP
Sbjct: 139 VKPPTTPPVQSPPVQPPTYKPPTSPVKPPTTTPPVKPP 176


>At3g20830.1 68416.m02634 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 408

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -3

Query: 539 PIRKPPLPARWPIH*CRKNLPHL 471
           P   PP P R P H CRKN P +
Sbjct: 384 PSSAPPSPLRSPPHVCRKNDPFI 406


>At2g27380.1 68415.m03302 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965
          Length = 761

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 16/51 (31%), Positives = 22/51 (43%)
 Frame = +3

Query: 702 VKXXPLPXVFSXXLRPPXTSITKTHPPSPXVGQXPTRDYKDPXXSPRKAPP 854
           V+  P P  +S  ++PP   +  T   SP V   P +    P  SP   PP
Sbjct: 660 VQKPPTP-TYSPPVKPPPVQLPPTPTYSPPVKPPPVQVPPTPTYSPPVKPP 709



 Score = 28.3 bits (60), Expect = 6.9
 Identities = 16/51 (31%), Positives = 22/51 (43%)
 Frame = +3

Query: 702 VKXXPLPXVFSXXLRPPXTSITKTHPPSPXVGQXPTRDYKDPXXSPRKAPP 854
           V+  P P  +S  ++PP   +  T   SP V   P +    P  SP   PP
Sbjct: 677 VQLPPTP-TYSPPVKPPPVQVPPTPTYSPPVKPPPVQVPPTPTYSPPIKPP 726



 Score = 27.9 bits (59), Expect = 9.1
 Identities = 16/51 (31%), Positives = 22/51 (43%)
 Frame = +3

Query: 702 VKXXPLPXVFSXXLRPPXTSITKTHPPSPXVGQXPTRDYKDPXXSPRKAPP 854
           V+  P P ++S  ++PP      T   SP V   P +    P  SP   PP
Sbjct: 273 VQTPPTP-IYSPPVKPPPVHKPPTPTYSPPVKSPPVQKPPTPTYSPPIKPP 322


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,854,943
Number of Sequences: 28952
Number of extensions: 270489
Number of successful extensions: 1062
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1027
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1989897600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)