Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_F02
         (954 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    33   0.078
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    30   0.55 
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    27   3.9  
SPBC660.05 |||conserved fungal protein|Schizosaccharomyces pombe...    27   5.1  
SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase Met9|...    26   6.8  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   6.8  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 32.7 bits (71), Expect = 0.078
 Identities = 14/37 (37%), Positives = 14/37 (37%)
 Frame = +1

Query: 466 PXPPPXXXGXXXXXGXPPPPXXXXXXXXXXXPPPPPP 576
           P P P         G PPPP           PPPPPP
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782



 Score = 32.3 bits (70), Expect = 0.10
 Identities = 14/38 (36%), Positives = 14/38 (36%)
 Frame = +2

Query: 461 SPPXXPPXXXXXXXXXXXXPPXPXXPXXXXXXPPPPPP 574
           SPP  PP            P  P  P      PPPPPP
Sbjct: 731 SPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPP 768



 Score = 29.5 bits (63), Expect = 0.73
 Identities = 14/37 (37%), Positives = 14/37 (37%)
 Frame = +1

Query: 466 PXPPPXXXGXXXXXGXPPPPXXXXXXXXXXXPPPPPP 576
           P PPP           PPPP           PPPPPP
Sbjct: 750 PVPPP---APIMGGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 29.1 bits (62), Expect = 0.97
 Identities = 13/37 (35%), Positives = 13/37 (35%)
 Frame = +3

Query: 465 PPPXPPXXWXXXXXGXPXPPXXXXXXXXXXXPPPPPP 575
           P P P         G P PP           PPPPPP
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782



 Score = 27.9 bits (59), Expect = 2.2
 Identities = 12/35 (34%), Positives = 12/35 (34%)
 Frame = +1

Query: 463 PPXPPPXXXGXXXXXGXPPPPXXXXXXXXXXXPPP 567
           PP PPP   G       PPPP           P P
Sbjct: 763 PPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAP 797



 Score = 27.1 bits (57), Expect = 3.9
 Identities = 12/36 (33%), Positives = 12/36 (33%)
 Frame = +1

Query: 466 PXPPPXXXGXXXXXGXPPPPXXXXXXXXXXXPPPPP 573
           P P P           PPPP           PPPPP
Sbjct: 748 PIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.9 bits (64), Expect = 0.55
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = +1

Query: 508 GXPPPPXXXXXXXXXXXPPPPPP 576
           G PPPP           PPPPPP
Sbjct: 7   GNPPPPPPPPGFEPPSQPPPPPP 29



 Score = 27.9 bits (59), Expect = 2.2
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +1

Query: 514 PPPPXXXXXXXXXXXPPPPPP 576
           PPPP           PPPPPP
Sbjct: 10  PPPPPPPGFEPPSQPPPPPPP 30



 Score = 26.6 bits (56), Expect = 5.1
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = +3

Query: 507 GXPXPPXXXXXXXXXXXPPPPPP 575
           G P PP           PPPPPP
Sbjct: 7   GNPPPPPPPPGFEPPSQPPPPPP 29


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 14/40 (35%), Positives = 14/40 (35%)
 Frame = -1

Query: 576 GGGGGGGXXXXXXGXXGXGGXXXXXXXXXXXXGGXXGGEK 457
           GG  GGG      G  G GG            GG  GG K
Sbjct: 33  GGARGGGRGGARGGRGGRGGARGGRGGSSGGRGGAKGGAK 72


>SPBC660.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 143

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 13/34 (38%), Positives = 13/34 (38%)
 Frame = -1

Query: 618 APPPPXXXXXXXXXGGGGGGGXXXXXXGXXGXGG 517
           APPPP         GGG  G       G  G GG
Sbjct: 98  APPPPRGPLFGPRIGGGHHGPLHGPHGGFGGRGG 131


>SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase
          Met9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 603

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -3

Query: 85 WNSKISFKXEXFPPXXG*GVQ 23
          W  K+++  E FPP    GVQ
Sbjct: 12 WKEKVTYSYEFFPPKTSTGVQ 32


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 18/67 (26%), Positives = 21/67 (31%)
 Frame = +1

Query: 376 KXPPGXXXXXKKXKXPXXXGXXKKXXXFFPPXPPPXXXGXXXXXGXPPPPXXXXXXXXXX 555
           K PP      ++ +     G         PP PPP           P PP          
Sbjct: 309 KRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNA---AGSIPLPP------QGRS 359

Query: 556 XPPPPPP 576
            PPPPPP
Sbjct: 360 APPPPPP 366


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,856,739
Number of Sequences: 5004
Number of extensions: 29099
Number of successful extensions: 268
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 487313384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)