Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_F01
         (952 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    25   0.86 
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    22   6.1  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   8.0  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      22   8.0  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    22   8.0  

>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 25.0 bits (52), Expect = 0.86
 Identities = 11/27 (40%), Positives = 11/27 (40%)
 Frame = -3

Query: 809 GAPPXPXXXPPXGGXGRXGXXGPXXPP 729
           G PP     PP GG    G   P  PP
Sbjct: 59  GIPPHHYGGPPSGGQPPQGMPYPRFPP 85


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +2

Query: 443 GGXXGGGGGGXXGXXGG 493
           GG  GGG  G  G  GG
Sbjct: 92  GGGRGGGRDGDRGDGGG 108


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -2

Query: 471 PPPPPPXXPPP 439
           PPPP P   PP
Sbjct: 736 PPPPHPHHQPP 746


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -2

Query: 471 PPPPPPXXPPP 439
           PPPP P   PP
Sbjct: 628 PPPPHPHHQPP 638


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 11/30 (36%), Positives = 11/30 (36%), Gaps = 1/30 (3%)
 Frame = -2

Query: 528 PXXXPPXXXXXXPPXXPXXPPPP-PPXXPP 442
           P   P        P  P  PP P PP  PP
Sbjct: 162 PALPPTGFLCNNYPPLPQVPPLPLPPIFPP 191


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,839
Number of Sequences: 336
Number of extensions: 2378
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 26789147
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)