Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP03_F_F01
(952 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 42 1e-04
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 39 9e-04
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 35 0.015
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 33 0.059
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 30 0.42
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 29 0.73
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 29 0.73
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 2.9
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 27 2.9
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 23 5.8
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 26 6.8
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 42.3 bits (95), Expect = 1e-04
Identities = 38/144 (26%), Positives = 38/144 (26%), Gaps = 4/144 (2%)
Frame = -2
Query: 603 PPXPXXXXXXGXXGXGXXGXGXXXPPXXXPP----XXXXXXPPXXPXXPPPPPPXXPPPX 436
PP P G G PP PP PP PPPPPP P
Sbjct: 313 PPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPST 372
Query: 435 RXXXXXXXXXXXPXGXPXPPXXXPXGGPPXXGGAXPXXXGXXXKXGGGGAPXXPXPXXPX 256
P PP P P A P G P P
Sbjct: 373 GRQPPPLSSSRAVSNPPAPPPAIPGRSAP----ALP-------PLGNASRTSTPPVPTPP 421
Query: 255 XPPPXAXXXXPPXPPXPSPPXXGP 184
PP A PP P PS P P
Sbjct: 422 SLPPSAPPSLPPSAP-PSLPMGAP 444
Score = 41.1 bits (92), Expect = 2e-04
Identities = 38/141 (26%), Positives = 40/141 (28%), Gaps = 5/141 (3%)
Frame = -2
Query: 603 PPXPXXXXXXGXXGXGXXGXGXXXPPXXXP-PXXXXXXPPXXPXXPPPPPPXXPP--PXR 433
PP P G G PP P PP PP PP P R
Sbjct: 339 PPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGR 398
Query: 432 XXXXXXXXXXXPXGXPXPPXXXPXGGPPXXGGAXPXXXGXXXKXGGGGAPXXPXPXXPXX 253
PP P PP + P G AP P P P
Sbjct: 399 SAPALPPLGNASR-TSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLP-PSAPIA 456
Query: 252 PP-PXAXXXXPPXPP-XPSPP 196
PP P PP PP P+PP
Sbjct: 457 PPLPAGMPAAPPLPPAAPAPP 477
Score = 36.3 bits (80), Expect = 0.006
Identities = 30/130 (23%), Positives = 31/130 (23%)
Frame = -2
Query: 828 PPPPXXGRPXGAGXXPPXXGXGXXXXXXPXXXPXXPXXXPXXPXXXPAGXXXPRXPXXXA 649
PPPP G PP P P P P P G R
Sbjct: 361 PPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGR--SAPALPPLG-NASRTSTPPV 417
Query: 648 PXXPRXXXXXXAAXXPPXPXXXXXXGXXGXGXXGXGXXXPPXXXPPXXXXXXPPXXPXXP 469
P P + P P PP P PP P P
Sbjct: 418 PTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPL---PAGMPAAPPLPPAAP 474
Query: 468 PPPPPXXPPP 439
PPP P P
Sbjct: 475 APPPAPAPAP 484
Score = 33.9 bits (74), Expect = 0.034
Identities = 28/116 (24%), Positives = 29/116 (25%)
Frame = -2
Query: 531 PPXXXPPXXXXXXPPXXPXXPPPPPPXXPPPXRXXXXXXXXXXXPXGXPXPPXXXPXGGP 352
PP P PP P PPP R P G PP P P
Sbjct: 312 PPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPR-SNAAGSIPLPPQGRSAPPPPPPRSAP 370
Query: 351 PXXGGAXPXXXGXXXKXGGGGAPXXPXPXXPXXPPPXAXXXXPPXPPXPSPPXXGP 184
P P P P PP PP P+PP P
Sbjct: 371 STGRQPPPLSSSRAVSNPPAPPPAIPGRSAPAL-PPLGNASRTSTPPVPTPPSLPP 425
Score = 29.9 bits (64), Expect = 0.55
Identities = 17/65 (26%), Positives = 18/65 (27%)
Frame = -2
Query: 828 PPPPXXGRPXGAGXXPPXXGXGXXXXXXPXXXPXXPXXXPXXPXXXPAGXXXPRXPXXXA 649
PP P GA PP P P P P P PA P P
Sbjct: 432 PPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAAPVASI 491
Query: 648 PXXPR 634
P+
Sbjct: 492 AELPQ 496
Score = 26.6 bits (56), Expect = 5.1
Identities = 33/135 (24%), Positives = 34/135 (25%), Gaps = 6/135 (4%)
Frame = -2
Query: 828 PPPPXXGRPXGAGXXP-PXXGXGXXXXXXPXXXPXXPXXXPXXPXXXPAG---XXXPRXP 661
PPPP R AG P P G P P P P P
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIP 396
Query: 660 XXXAPXXPRXXXXXXAAXXPPXPXXXXXXGXXGXGXXGXGXXXPPXXXPPXXXXXXPPXX 481
AP P + PP P P PP P
Sbjct: 397 GRSAPALPPLGNASRTS-TPPVPTPPSL------------PPSAPPSLPPSAPPSLPMGA 443
Query: 480 PXXPPPPP--PXXPP 442
P PP PP P PP
Sbjct: 444 PAAPPLPPSAPIAPP 458
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 39.1 bits (87), Expect = 9e-04
Identities = 41/183 (22%), Positives = 46/183 (25%)
Frame = -2
Query: 732 PXXPXXXPXXPXXXPAGXXXPRXPXXXAPXXPRXXXXXXAAXXPPXPXXXXXXGXXGXGX 553
P P P P+G P AP P+ + PP P
Sbjct: 1074 PSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKP-----SVAVPPVPAPSGAPPVPKPSV 1128
Query: 552 XGXGXXXPPXXXPPXXXXXXPPXXPXXPPPPPPXXPPPXRXXXXXXXXXXXPXGXPXPPX 373
PP P P P P P PP + G P P
Sbjct: 1129 AA-----PPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIP--PV 1181
Query: 372 XXPXGGPPXXGGAXPXXXGXXXKXGGGGAPXXPXPXXPXXPPPXAXXXXPPXPPXPSPPX 193
P G P P K G P P P P P A P P +PP
Sbjct: 1182 PKPAAGVPPV--PPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPV 1239
Query: 192 XGP 184
P
Sbjct: 1240 PAP 1242
Score = 34.7 bits (76), Expect = 0.019
Identities = 30/117 (25%), Positives = 31/117 (26%), Gaps = 1/117 (0%)
Frame = -2
Query: 531 PPXXXPPXXXXXXPPXXPXXPPPPPPXXPPPXRXXXXXXXXXXXPXGXPXPPXXXPXGGP 352
PP P P PP P P PP PP P G P
Sbjct: 1063 PPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPV-PKPSVAAPPVPKPSVAVPPVPAPSGAP 1121
Query: 351 PXXGGAXPXXXGXXXKXGGGGAPXXPXPXXPXXPPPXAXXXXP-PXPPXPSPPXXGP 184
P P GAP P P P P P P P +PP P
Sbjct: 1122 PV---PKPSVAAPPVPV-PSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAP 1174
Score = 33.9 bits (74), Expect = 0.034
Identities = 25/97 (25%), Positives = 27/97 (27%), Gaps = 1/97 (1%)
Frame = -2
Query: 471 PPPPPPXXPPPXRXXXXXXXXXXXPXGXPXPPXXXPXGGPPXXGGAXPXXXGXXXKXGGG 292
PP P P PP G P P P P + P G
Sbjct: 1032 PPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVP--APSSEIPSIPAPSGAPPVPAPS 1089
Query: 291 GAPXXPXPXXPXXPPPXAXXXXPPXPPXP-SPPXXGP 184
G P P P P P PP P +PP P
Sbjct: 1090 GIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKP 1126
Score = 29.5 bits (63), Expect = 0.73
Identities = 32/135 (23%), Positives = 35/135 (25%), Gaps = 5/135 (3%)
Frame = -2
Query: 828 PPPPXXGRPXGAGXXPPXXGXGXXXXXXPXXXPXXPXXX-PXXPXXXPAGXXXPRXPXXX 652
PP P +P A P P P P P P+G P
Sbjct: 1092 PPVP---KPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVA 1148
Query: 651 APXXPRXXXXXX----AAXXPPXPXXXXXXGXXGXGXXGXGXXXPPXXXPPXXXXXXPPX 484
AP P + PP P G PP PP P
Sbjct: 1149 APPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPV-----PKP 1203
Query: 483 XPXXPPPPPPXXPPP 439
PP PPP PP
Sbjct: 1204 SVGVPPVPPPSTAPP 1218
Score = 27.1 bits (57), Expect = 3.9
Identities = 26/127 (20%), Positives = 27/127 (21%)
Frame = -2
Query: 819 PXXGRPXGAGXXPPXXGXGXXXXXXPXXXPXXPXXXPXXPXXXPAGXXXPRXPXXXAPXX 640
P P GA P G P P P+G P AP
Sbjct: 1074 PSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPV 1133
Query: 639 PRXXXXXXAAXXPPXPXXXXXXGXXGXGXXGXGXXXPPXXXPPXXXXXXPPXXPXXPPPP 460
P P PP P P PP P
Sbjct: 1134 P-VPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVP 1192
Query: 459 PPXXPPP 439
PP PP
Sbjct: 1193 PPSEAPP 1199
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 35.1 bits (77), Expect = 0.015
Identities = 35/112 (31%), Positives = 35/112 (31%), Gaps = 10/112 (8%)
Frame = +2
Query: 188 PXXGGLGWGGXGGXXXXAXG---------GGXXGXXGXGXXGAPPPPXLXXXPXXXGXAP 340
P GLG GG A G GG G G G G PP P G
Sbjct: 158 PVAAGLGGLALGGLASHALGNLFHHRGHNGGGFGGFGGGSGGPPPGPGGFGGFGGFGGEG 217
Query: 341 PXXGGPPXGXXXGGXGXPXXXXXXXXXXXXXRXGG-GXXGGGGGGXXGXXGG 493
GG G GG G GG G GGG GG G GG
Sbjct: 218 HHHGG--HGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGPGG 267
Score = 32.7 bits (71), Expect = 0.078
Identities = 24/73 (32%), Positives = 25/73 (34%), Gaps = 3/73 (4%)
Frame = +2
Query: 185 GPXXGGLGWGGXGGXXXXAXGGGXXGXXGXGXXG-APPPPXLXXXPXXXGXAPPXXGGPP 361
GP G G+GG GG G G G G G P P G GG P
Sbjct: 199 GPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGP 258
Query: 362 --XGXXXGGXGXP 394
G GG G P
Sbjct: 259 GGFGGGPGGHGGP 271
Score = 27.5 bits (58), Expect = 2.9
Identities = 15/41 (36%), Positives = 15/41 (36%)
Frame = +1
Query: 688 GXXXGPXGXXXGGGGGXXGPXXPXRPXPPXGGXXXGXGGAP 810
G GP G G GG GP GG G GG P
Sbjct: 225 GFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGP 265
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 33.1 bits (72), Expect = 0.059
Identities = 18/42 (42%), Positives = 18/42 (42%)
Frame = -3
Query: 827 PXXPXXGAPPXPXXXPPXGGXGRXGXXGPXXPPPPPXXXPXG 702
P P G PP P PP G G GP PPPPP G
Sbjct: 753 PPAPIMGGPPPPP--PPPGVAGA----GPPPPPPPPPAVSAG 788
Score = 28.7 bits (61), Expect = 1.3
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = -2
Query: 288 APXXPXPXXPXXPPPXAXXXXPPXPPXPSP 199
AP P P PPP PP PP P P
Sbjct: 755 APIMGGPPPPP-PPPGVAGAGPPPPPPPPP 783
Score = 28.3 bits (60), Expect = 1.7
Identities = 14/36 (38%), Positives = 14/36 (38%), Gaps = 6/36 (16%)
Frame = -2
Query: 528 PXXXPPXXXXXXPPXXPXXPP------PPPPXXPPP 439
P PP P P PP PPPP PPP
Sbjct: 748 PIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 27.9 bits (59), Expect = 2.2
Identities = 14/36 (38%), Positives = 14/36 (38%), Gaps = 6/36 (16%)
Frame = -2
Query: 531 PPXXXPPXXXXXXPPXXPXXP------PPPPPXXPP 442
P PP PP P P PPPPP PP
Sbjct: 748 PIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 27.5 bits (58), Expect = 2.9
Identities = 14/38 (36%), Positives = 14/38 (36%)
Frame = -3
Query: 800 PXPXXXPPXGGXGRXGXXGPXXPPPPPXXXPXGPXXXP 687
P P PP GP PPPPP GP P
Sbjct: 746 PAPIPVPPPAPI----MGGPPPPPPPPGVAGAGPPPPP 779
Score = 27.5 bits (58), Expect = 2.9
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = -2
Query: 261 PXXPPPXAXXXXPPXPPXPSPP 196
P PPP P PP P PP
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPPP 783
Score = 27.1 bits (57), Expect = 3.9
Identities = 13/33 (39%), Positives = 13/33 (39%)
Frame = +2
Query: 284 GAPPPPXLXXXPXXXGXAPPXXGGPPXGXXXGG 382
G PPPP P G PP PP GG
Sbjct: 759 GGPPPPP--PPPGVAGAGPPPPPPPPPAVSAGG 789
Score = 26.6 bits (56), Expect = 5.1
Identities = 11/30 (36%), Positives = 11/30 (36%)
Frame = -2
Query: 285 PXXPXPXXPXXPPPXAXXXXPPXPPXPSPP 196
P P P PPP PP P PP
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 26.2 bits (55), Expect = 6.8
Identities = 16/58 (27%), Positives = 16/58 (27%)
Frame = -2
Query: 528 PXXXPPXXXXXXPPXXPXXPPPPPPXXPPPXRXXXXXXXXXXXPXGXPXPPXXXPXGG 355
P PP P P PPP P P P P PP GG
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGG 789
Score = 25.8 bits (54), Expect = 9.0
Identities = 10/24 (41%), Positives = 10/24 (41%)
Frame = -2
Query: 276 PXPXXPXXPPPXAXXXXPPXPPXP 205
P P PPP PP PP P
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPP 767
Score = 25.8 bits (54), Expect = 9.0
Identities = 12/31 (38%), Positives = 12/31 (38%)
Frame = -2
Query: 276 PXPXXPXXPPPXAXXXXPPXPPXPSPPXXGP 184
P P P PP PP PP P GP
Sbjct: 746 PAPI-PVPPPAPIMGGPPPPPPPPGVAGAGP 775
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 30.3 bits (65), Expect = 0.42
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = -2
Query: 528 PXXXPPXXXXXXPPXXPXXPPPPPPXXPPP 439
P PP PP P P PP PPP
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734
Score = 29.5 bits (63), Expect = 0.73
Identities = 12/31 (38%), Positives = 12/31 (38%)
Frame = -2
Query: 531 PPXXXPPXXXXXXPPXXPXXPPPPPPXXPPP 439
P PP PP P PPPP P P
Sbjct: 1694 PQSAAPPQMSAPTPPPPPMSVPPPPSAPPMP 1724
Score = 29.1 bits (62), Expect = 0.96
Identities = 16/41 (39%), Positives = 16/41 (39%), Gaps = 4/41 (9%)
Frame = -2
Query: 306 KXGGGGAPXXPXPXXPXXP----PPXAXXXXPPXPPXPSPP 196
K GG AP P P P PP PP PP PP
Sbjct: 1676 KLFGGMAPAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPP 1716
Score = 27.5 bits (58), Expect = 2.9
Identities = 12/31 (38%), Positives = 12/31 (38%)
Frame = -2
Query: 288 APXXPXPXXPXXPPPXAXXXXPPXPPXPSPP 196
AP P P PPP A P P PP
Sbjct: 1704 APTPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734
Score = 26.6 bits (56), Expect = 5.1
Identities = 12/37 (32%), Positives = 12/37 (32%)
Frame = -2
Query: 549 GXGXXXPPXXXPPXXXXXXPPXXPXXPPPPPPXXPPP 439
G P P PP PPPPP PP
Sbjct: 1680 GMAPAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPP 1716
Score = 26.2 bits (55), Expect = 6.8
Identities = 12/32 (37%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Frame = -2
Query: 276 PXPXXPXXPPPXAXXXXPPX-PPXPSPPXXGP 184
P P PPP PP PP P+ P P
Sbjct: 1700 PQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAP 1731
Score = 25.8 bits (54), Expect = 9.0
Identities = 10/25 (40%), Positives = 10/25 (40%)
Frame = -2
Query: 531 PPXXXPPXXXXXXPPXXPXXPPPPP 457
PP PP P P PPPP
Sbjct: 1710 PPMSVPPPPSAPPMPAGPPSAPPPP 1734
Score = 25.8 bits (54), Expect = 9.0
Identities = 11/31 (35%), Positives = 11/31 (35%)
Frame = -2
Query: 531 PPXXXPPXXXXXXPPXXPXXPPPPPPXXPPP 439
P PP P P PPPP P P
Sbjct: 1711 PMSVPPPPSAPPMPAGPPSAPPPPLPASSAP 1741
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 29.5 bits (63), Expect = 0.73
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = -2
Query: 516 PPXXXXXXPPXXPXXPPPPPPXXPP 442
PP P PPPPPP PP
Sbjct: 224 PPTYTPKQADPLPAPPPPPPPTLPP 248
Score = 27.1 bits (57), Expect = 3.9
Identities = 11/30 (36%), Positives = 11/30 (36%)
Frame = -2
Query: 531 PPXXXPPXXXXXXPPXXPXXPPPPPPXXPP 442
PP PP PPPPP PP
Sbjct: 168 PPSFQPPSAAAPATSLPSDYNPPPPPPPPP 197
Score = 25.8 bits (54), Expect = 9.0
Identities = 11/31 (35%), Positives = 11/31 (35%)
Frame = -2
Query: 531 PPXXXPPXXXXXXPPXXPXXPPPPPPXXPPP 439
PP P P PPPP PPP
Sbjct: 167 PPPSFQPPSAAAPATSLPSDYNPPPPPPPPP 197
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 29.5 bits (63), Expect = 0.73
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = -2
Query: 270 PXXPXXPPPXAXXXXPPXPPXPSPP 196
P P PPP P PP P PP
Sbjct: 6 PGNPPPPPPPPGFEPPSQPPPPPPP 30
Score = 29.1 bits (62), Expect = 0.96
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -2
Query: 492 PPXXPXXPPPPPPXXPP 442
PP P PPPPP PP
Sbjct: 5 PPGNPPPPPPPPGFEPP 21
Score = 28.7 bits (61), Expect = 1.3
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = -2
Query: 516 PPXXXXXXPPXXPXXPPPPPPXXPPP 439
PP PP PP PP PPP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPP 30
Score = 25.8 bits (54), Expect = 9.0
Identities = 10/25 (40%), Positives = 10/25 (40%)
Frame = -2
Query: 270 PXXPXXPPPXAXXXXPPXPPXPSPP 196
P PPP PP P P PP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPP 29
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 27.5 bits (58), Expect = 2.9
Identities = 13/33 (39%), Positives = 13/33 (39%), Gaps = 3/33 (9%)
Frame = -2
Query: 528 PXXXPPXXXXXXPPXXPXXP---PPPPPXXPPP 439
P P PP P P PP PP PPP
Sbjct: 172 PPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPP 204
Score = 26.6 bits (56), Expect = 5.1
Identities = 27/112 (24%), Positives = 28/112 (25%), Gaps = 5/112 (4%)
Frame = -2
Query: 531 PPXXXPPXXXXXXPPXXPXXPPPPPPXXPPPXRXXXXXXXXXXXPXGXPXPPXXXPXGGP 352
PP P P P PP P PPP + P P P P
Sbjct: 144 PPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPP 203
Query: 351 PXXGGAXPXXXGXXXK---XGGGGAP--XXPXPXXPXXPPPXAXXXXPPXPP 211
P A G AP P P P PP PP
Sbjct: 204 PPLSQAPVANTSSRPSSFAPPAGHAPNVTSESPKFPNRGPSIPSASVPPVPP 255
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 27.5 bits (58), Expect = 2.9
Identities = 13/31 (41%), Positives = 13/31 (41%)
Frame = +2
Query: 440 GGGXXGGGGGGXXGXXGGXXXXXXGGXXXGG 532
GG GG GGG G GG G GG
Sbjct: 155 GGNSRGGFGGGSRGGFGGGSRGGSRGGFRGG 185
Score = 26.2 bits (55), Expect = 6.8
Identities = 13/27 (48%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Frame = +2
Query: 440 GGGXXGG-GGGGXXGXXGGXXXXXXGG 517
GGG GG GGG G GG GG
Sbjct: 163 GGGSRGGFGGGSRGGSRGGFRGGSRGG 189
Score = 25.8 bits (54), Expect = 9.0
Identities = 12/34 (35%), Positives = 13/34 (38%)
Frame = +2
Query: 185 GPXXGGLGWGGXGGXXXXAXGGGXXGXXGXGXXG 286
G GG G G GG + GG G G G
Sbjct: 156 GNSRGGFGGGSRGGFGGGSRGGSRGGFRGGSRGG 189
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 22.6 bits (46), Expect(2) = 5.8
Identities = 13/42 (30%), Positives = 13/42 (30%), Gaps = 2/42 (4%)
Frame = -2
Query: 387 PXPPXXXPXGGPPXXG--GAXPXXXGXXXKXGGGGAPXXPXP 268
P PP P GPP A P G P P P
Sbjct: 1884 PPPPMALPKAGPPSAAPTSALPPAGPPAGATAISGNPGMPAP 1925
Score = 21.8 bits (44), Expect(2) = 5.8
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = -2
Query: 471 PPPPPPXXPP 442
PPPPPP P
Sbjct: 1882 PPPPPPMALP 1891
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 26.2 bits (55), Expect = 6.8
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -2
Query: 480 PXXPPPPPPXXPPP 439
P PPPPPP PPP
Sbjct: 942 PAFPPPPPP--PPP 953
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,590,123
Number of Sequences: 5004
Number of extensions: 21422
Number of successful extensions: 369
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 485316198
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -