Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_F01
         (952 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       28   0.11 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   4.1  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 28.3 bits (60), Expect = 0.11
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = -3

Query: 854 GXXAGXXRXPXXPXXGAPPXPXXXPPXGG 768
           G      + P  P  G+PP P   PP GG
Sbjct: 22  GPQPSPHQSPQAPQRGSPPNPSQGPPPGG 50



 Score = 24.2 bits (50), Expect = 1.8
 Identities = 11/35 (31%), Positives = 11/35 (31%)
 Frame = -2

Query: 543 GXXXPPXXXPPXXXXXXPPXXPXXPPPPPPXXPPP 439
           G    P   P       PP     PPP  P   PP
Sbjct: 22  GPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 22.2 bits (45), Expect = 7.1
 Identities = 10/31 (32%), Positives = 10/31 (32%)
 Frame = -2

Query: 276 PXPXXPXXPPPXAXXXXPPXPPXPSPPXXGP 184
           P P       P A     P  P   PP  GP
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGP 51



 Score = 21.8 bits (44), Expect = 9.4
 Identities = 11/35 (31%), Positives = 11/35 (31%)
 Frame = +2

Query: 275 GXXGAPPPPXLXXXPXXXGXAPPXXGGPPXGXXXG 379
           G  G  P P         G  P    GPP G   G
Sbjct: 19  GAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPG 53


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 4.1
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = -2

Query: 489 PXXPXXPPPPPPXXPP 442
           P  P  PPPPP    P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 22.2 bits (45), Expect = 7.1
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -2

Query: 471 PPPPPPXXPPP 439
           PP P P  PPP
Sbjct: 338 PPKPAPPPPPP 348



 Score = 21.8 bits (44), Expect = 9.4
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -2

Query: 471 PPPPPPXXPPP 439
           PPPPPP    P
Sbjct: 343 PPPPPPSSSGP 353


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,515
Number of Sequences: 438
Number of extensions: 5812
Number of successful extensions: 32
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31202262
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)