Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_E24
         (837 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    27   4.4  
SPAC688.13 |scn1||TatD DNase family Scn1|Schizosaccharomyces pom...    26   7.6  

>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
 Frame = +1

Query: 403  FKRVQDERTQHK-HRWRQ----VYDRREASTHHIRVIALLQGSLAVY 528
            F R+ DE  Q    RW+Q    VY    +  HH + I  LQ +  +Y
Sbjct: 2679 FSRIIDECMQFSLRRWQQLPKRVYQSHVSLLHHFQEIVELQEAFGIY 2725


>SPAC688.13 |scn1||TatD DNase family Scn1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 335

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 463 RREASTHHIRVIALLQGSLAVYWRDR 540
           +R  S H ++  ALL  SLA +W  R
Sbjct: 179 QRAVSVHCVQTYALLYSSLAKFWDGR 204


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,277,145
Number of Sequences: 5004
Number of extensions: 66039
Number of successful extensions: 154
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)