Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_E24
         (837 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29266| Best HMM Match : Glyco_hydro_35 (HMM E-Value=0)              78   1e-14
SB_24925| Best HMM Match : Glyco_hydro_35 (HMM E-Value=0)              74   1e-13
SB_41369| Best HMM Match : No HMM Matches (HMM E-Value=.)              71   1e-12
SB_8766| Best HMM Match : Glyco_hydro_35 (HMM E-Value=1.2e-33)         36   0.031
SB_57962| Best HMM Match : Glyco_hydro_35 (HMM E-Value=1.9e-19)        35   0.071
SB_26473| Best HMM Match : Glyco_hydro_35 (HMM E-Value=0)              35   0.071
SB_32684| Best HMM Match : Extensin_2 (HMM E-Value=0.96)               31   1.5  
SB_43025| Best HMM Match : Phage_fiber (HMM E-Value=0.35)              28   8.2  

>SB_29266| Best HMM Match : Glyco_hydro_35 (HMM E-Value=0)
          Length = 568

 Score = 77.8 bits (183), Expect = 1e-14
 Identities = 34/65 (52%), Positives = 46/65 (70%)
 Frame = +1

Query: 526 YWRDRLHKFKAAGLNTVATYVEWSYHEPXEKQYNFEGDRDLVRFVQTAAEVXLHVLLRVG 705
           YW+DRL K KA+G+NTV TYV W+ HEP  KQYNF G+ +L  F++ A  + L V+LR G
Sbjct: 52  YWKDRLLKLKASGMNTVQTYVPWNLHEPIPKQYNFAGNANLTSFLEIAQSLDLLVILRPG 111

Query: 706 SLHLC 720
             ++C
Sbjct: 112 P-YIC 115



 Score = 35.5 bits (78), Expect = 0.054
 Identities = 30/100 (30%), Positives = 41/100 (41%), Gaps = 3/100 (3%)
 Frame = +2

Query: 455 FMIDGKPLHIISGSLHYFRGP---WQCIGVTDCISSKPLVSTQLLRT*NGVTMSPRRNSI 625
           FM DGKP   ISG +HYFR P   W+   +   + +  + + Q     N     P++ + 
Sbjct: 29  FMKDGKPFRYISGGMHYFRVPQYYWKDRLLK--LKASGMNTVQTYVPWNLHEPIPKQYNF 86

Query: 626 ISKEIVTW*DLFRQRPKXACTFY*GLGPYICAERDLGXLP 745
                +T                   GPYICAE D G LP
Sbjct: 87  AGNANLT--SFLEIAQSLDLLVILRPGPYICAEWDFGGLP 124


>SB_24925| Best HMM Match : Glyco_hydro_35 (HMM E-Value=0)
          Length = 555

 Score = 74.1 bits (174), Expect = 1e-13
 Identities = 32/59 (54%), Positives = 40/59 (67%)
 Frame = +1

Query: 523 VYWRDRLHKFKAAGLNTVATYVEWSYHEPXEKQYNFEGDRDLVRFVQTAAEVXLHVLLR 699
           +YW+DRL K K AGLN V TYV W+ HEP    Y+FEG+ DL  F++ A  V L V+LR
Sbjct: 58  IYWKDRLQKMKFAGLNAVQTYVAWNLHEPEIGTYDFEGENDLEEFIKIAQSVGLLVILR 116



 Score = 37.9 bits (84), Expect = 0.010
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = +2

Query: 422 KGHNISIVGDKFMIDGKPLHIISGSLHYFRGP 517
           +  ++ +  + F+ DGKP   ISGS+HYFR P
Sbjct: 25  RSFSVDLTNNVFLKDGKPFRYISGSIHYFRVP 56


>SB_41369| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 807

 Score = 70.9 bits (166), Expect = 1e-12
 Identities = 29/65 (44%), Positives = 44/65 (67%)
 Frame = +1

Query: 526 YWRDRLHKFKAAGLNTVATYVEWSYHEPXEKQYNFEGDRDLVRFVQTAAEVXLHVLLRVG 705
           +W+DRL K KAAG+N + TYV W+ HEP   +YNF+G  DL+ F++ A  + L  ++R G
Sbjct: 57  FWKDRLLKMKAAGMNAIQTYVPWNLHEPTPGKYNFDGGADLLSFLELAHSLDLVAIVRAG 116

Query: 706 SLHLC 720
             ++C
Sbjct: 117 P-YIC 120



 Score = 39.5 bits (88), Expect = 0.003
 Identities = 32/116 (27%), Positives = 50/116 (43%), Gaps = 3/116 (2%)
 Frame = +2

Query: 407 NEFKMKGHNISIVGDKFMIDGKPLHIISGSLHYFRGP---WQCIGVTDCISSKPLVSTQL 577
           N    K   I    ++F+ DG+P   ISG +HYFR P   W+   +    +    + T +
Sbjct: 18  NPIAAKSFTIDFDNNRFLKDGQPFRYISGGIHYFRVPQFFWKDRLLKMKAAGMNAIQTYV 77

Query: 578 LRT*NGVTMSPRRNSIISKEIVTW*DLFRQRPKXACTFY*GLGPYICAERDLGXLP 745
               +  T   + N     +++++ +L       A       GPYICAE D G LP
Sbjct: 78  PWNLHEPTPG-KYNFDGGADLLSFLELAHSLDLVAIV---RAGPYICAEWDFGGLP 129


>SB_8766| Best HMM Match : Glyco_hydro_35 (HMM E-Value=1.2e-33)
          Length = 284

 Score = 36.3 bits (80), Expect = 0.031
 Identities = 15/26 (57%), Positives = 19/26 (73%)
 Frame = +2

Query: 446 GDKFMIDGKPLHIISGSLHYFRGPWQ 523
           G  F +DGKP  I+SG++HYFR P Q
Sbjct: 46  GRHFTMDGKPFTILSGAMHYFRIPPQ 71



 Score = 32.3 bits (70), Expect = 0.50
 Identities = 13/19 (68%), Positives = 14/19 (73%)
 Frame = +1

Query: 526 YWRDRLHKFKAAGLNTVAT 582
           YW DR+ K KA GLNTV T
Sbjct: 72  YWEDRIVKLKAMGLNTVET 90



 Score = 30.3 bits (65), Expect = 2.0
 Identities = 12/14 (85%), Positives = 12/14 (85%)
 Frame = +2

Query: 704 GPYICAERDLGXLP 745
           GPYICAE DLG LP
Sbjct: 108 GPYICAEWDLGGLP 121


>SB_57962| Best HMM Match : Glyco_hydro_35 (HMM E-Value=1.9e-19)
          Length = 215

 Score = 35.1 bits (77), Expect = 0.071
 Identities = 13/20 (65%), Positives = 18/20 (90%)
 Frame = +2

Query: 452 KFMIDGKPLHIISGSLHYFR 511
           KF+++GKP  I+SG+LHYFR
Sbjct: 72  KFILNGKPFVILSGALHYFR 91



 Score = 33.5 bits (73), Expect = 0.22
 Identities = 14/19 (73%), Positives = 14/19 (73%)
 Frame = +1

Query: 526 YWRDRLHKFKAAGLNTVAT 582
           YW DRL K KA GLNTV T
Sbjct: 96  YWADRLKKLKAMGLNTVET 114



 Score = 29.1 bits (62), Expect = 4.7
 Identities = 11/14 (78%), Positives = 12/14 (85%)
 Frame = +2

Query: 704 GPYICAERDLGXLP 745
           GPYIC+E DLG LP
Sbjct: 132 GPYICSEWDLGGLP 145


>SB_26473| Best HMM Match : Glyco_hydro_35 (HMM E-Value=0)
          Length = 533

 Score = 35.1 bits (77), Expect = 0.071
 Identities = 14/21 (66%), Positives = 17/21 (80%)
 Frame = +1

Query: 526 YWRDRLHKFKAAGLNTVATYV 588
           YW+DRL K KA GLNTV T++
Sbjct: 272 YWKDRLVKLKAMGLNTVETWL 292



 Score = 33.9 bits (74), Expect = 0.16
 Identities = 13/20 (65%), Positives = 17/20 (85%)
 Frame = +2

Query: 452 KFMIDGKPLHIISGSLHYFR 511
           KF ++G+P  I+SGSLHYFR
Sbjct: 248 KFTLNGEPFLILSGSLHYFR 267


>SB_32684| Best HMM Match : Extensin_2 (HMM E-Value=0.96)
          Length = 201

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 2/86 (2%)
 Frame = -1

Query: 663 LNKSHQVTISFEIILFLLGLMV--TPFYVRSNCVETSGFELMQSVTPIHCQGPLK*CNDP 490
           +N +  +  S  +++ L  LMV  TP  V S     +   LM + TP+    P    N  
Sbjct: 16  VNSTPLMVNSPPLMVNLTPLMVNSTPLMVNSTPPMVNSPPLMVNSTPLRVNSPPLMVNST 75

Query: 489 DMMCRGFPSIINLSPTMLMLCPFILN 412
            +M    P ++N  P M+   P  +N
Sbjct: 76  PLMVNSTPPMVNSPPLMVNSTPLRVN 101



 Score = 28.7 bits (61), Expect = 6.2
 Identities = 17/61 (27%), Positives = 26/61 (42%)
 Frame = -1

Query: 594 PFYVRSNCVETSGFELMQSVTPIHCQGPLK*CNDPDMMCRGFPSIINLSPTMLMLCPFIL 415
           P  V S  +  +   LM + TP+         N P +M    P  +N +P M+   P I+
Sbjct: 55  PLMVNSTPLRVNSPPLMVNSTPLMVNSTPPMVNSPPLMVNSTPLRVNSTPQMVDSLPPIV 114

Query: 414 N 412
           N
Sbjct: 115 N 115


>SB_43025| Best HMM Match : Phage_fiber (HMM E-Value=0.35)
          Length = 568

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = -2

Query: 437 LCCVLSS*TRLKVYFDDLHLSLG*PRAHNLLRNTFVQENTVMQMLQLR 294
           LC   SS +  K +F+ L  S G   A+N   NTF   N    +L+ R
Sbjct: 81  LCTEASSASPFKEHFEKLIESTGHDNANNQDENTFYMPNVFSYILKFR 128


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,791,174
Number of Sequences: 59808
Number of extensions: 514055
Number of successful extensions: 1334
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1332
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2359470773
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)