Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP03_F_E23
(902 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.24
SB_19504| Best HMM Match : FH2 (HMM E-Value=1.2e-30) 33 0.42
SB_16095| Best HMM Match : Podocalyxin (HMM E-Value=1) 32 0.55
SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.55
SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33) 30 2.2
SB_47784| Best HMM Match : Ank (HMM E-Value=1.4e-08) 29 3.9
SB_812| Best HMM Match : FH2 (HMM E-Value=0) 29 3.9
SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1) 29 3.9
SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10) 29 5.1
SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_2292| Best HMM Match : Extensin_2 (HMM E-Value=0.033) 29 5.1
SB_34481| Best HMM Match : Extensin_2 (HMM E-Value=0.48) 29 6.8
SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.8
SB_59302| Best HMM Match : Collagen (HMM E-Value=0) 28 9.0
>SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1000
Score = 33.5 bits (73), Expect = 0.24
Identities = 21/63 (33%), Positives = 21/63 (33%), Gaps = 4/63 (6%)
Frame = +2
Query: 722 PPPXLXXXXXXPRXPGGGVXXXFXXXXKKT--PPPPPGXXXXXXFG--XPXPXXPXXXXP 889
PPP P PGG PPPPPG G P P P P
Sbjct: 923 PPPPGGNAPLPPPPPGGSAPSQPPPPGGNAPPPPPPPGGSAPPPGGGAPPLPPPPGGSAP 982
Query: 890 PPP 898
PPP
Sbjct: 983 PPP 985
Score = 32.3 bits (70), Expect = 0.55
Identities = 15/46 (32%), Positives = 15/46 (32%)
Frame = +2
Query: 764 PGGGVXXXFXXXXKKTPPPPPGXXXXXXFGXPXPXXPXXXXPPPPG 901
PGG PPPPP P P PPPPG
Sbjct: 904 PGGSESPSASPPGGSVPPPPPPPGGNAPLPPPPPGGSAPSQPPPPG 949
Score = 28.7 bits (61), Expect = 6.8
Identities = 15/46 (32%), Positives = 15/46 (32%)
Frame = +2
Query: 764 PGGGVXXXFXXXXKKTPPPPPGXXXXXXFGXPXPXXPXXXXPPPPG 901
PGG V P PPP P P PPPPG
Sbjct: 915 PGGSVPPPPPPPGGNAPLPPPPPGGSAPSQPPPPGGNAPPPPPPPG 960
>SB_19504| Best HMM Match : FH2 (HMM E-Value=1.2e-30)
Length = 739
Score = 32.7 bits (71), Expect = 0.42
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = +2
Query: 812 PPPPPGXXXXXXFGXPXPXXPXXXXPPPP 898
PPPPP G P P P PPPP
Sbjct: 196 PPPPPPPPPGFPGGAPPPPPPPFGAPPPP 224
>SB_16095| Best HMM Match : Podocalyxin (HMM E-Value=1)
Length = 768
Score = 32.3 bits (70), Expect = 0.55
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = +2
Query: 812 PPPPPGXXXXXXFGXPXPXXPXXXXPPPP 898
PPPPPG P P P PPPP
Sbjct: 664 PPPPPGGQAGGAPPPPPPPLPGGAAPPPP 692
>SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 669
Score = 32.3 bits (70), Expect = 0.55
Identities = 19/59 (32%), Positives = 19/59 (32%)
Frame = +2
Query: 722 PPPXLXXXXXXPRXPGGGVXXXFXXXXKKTPPPPPGXXXXXXFGXPXPXXPXXXXPPPP 898
PPP P P K PPPPP G P P P PPPP
Sbjct: 346 PPPPPTNNPPSPPPPTNNTPPPPPPTNKPPPPPPPTN------GPPPPPPPTNGPPPPP 398
Score = 28.3 bits (60), Expect = 9.0
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = +2
Query: 812 PPPPPGXXXXXXFGXPXPXXPXXXXPPPP 898
PPPPP G P P P PPPP
Sbjct: 384 PPPPPPPTN----GPPPPPPPTNGPPPPP 408
>SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33)
Length = 457
Score = 30.3 bits (65), Expect = 2.2
Identities = 12/30 (40%), Positives = 13/30 (43%)
Frame = +2
Query: 809 TPPPPPGXXXXXXFGXPXPXXPXXXXPPPP 898
+PPPPP P P P PPPP
Sbjct: 364 SPPPPPPPPPPPPSPPPPPPPPPPSPPPPP 393
Score = 30.3 bits (65), Expect = 2.2
Identities = 17/59 (28%), Positives = 17/59 (28%)
Frame = +2
Query: 722 PPPXLXXXXXXPRXPGGGVXXXFXXXXKKTPPPPPGXXXXXXFGXPXPXXPXXXXPPPP 898
PPP P P PPPPP P P P PPPP
Sbjct: 373 PPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPPPPPPPPPPP 431
Score = 29.9 bits (64), Expect = 2.9
Identities = 17/59 (28%), Positives = 18/59 (30%)
Frame = +2
Query: 722 PPPXLXXXXXXPRXPGGGVXXXFXXXXKKTPPPPPGXXXXXXFGXPXPXXPXXXXPPPP 898
PPP P P + PPPPP P P P PPPP
Sbjct: 367 PPPPPPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPPPPP 425
Score = 29.9 bits (64), Expect = 2.9
Identities = 17/59 (28%), Positives = 17/59 (28%)
Frame = +2
Query: 722 PPPXLXXXXXXPRXPGGGVXXXFXXXXKKTPPPPPGXXXXXXFGXPXPXXPXXXXPPPP 898
PPP P P PPPPP P P P PPPP
Sbjct: 371 PPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPPPPPPPPP 429
Score = 29.5 bits (63), Expect = 3.9
Identities = 17/59 (28%), Positives = 17/59 (28%)
Frame = +2
Query: 722 PPPXLXXXXXXPRXPGGGVXXXFXXXXKKTPPPPPGXXXXXXFGXPXPXXPXXXXPPPP 898
PPP P P PPPPP P P P PPPP
Sbjct: 365 PPPPPPPPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPPP 423
>SB_47784| Best HMM Match : Ank (HMM E-Value=1.4e-08)
Length = 593
Score = 29.5 bits (63), Expect = 3.9
Identities = 12/31 (38%), Positives = 13/31 (41%)
Frame = +2
Query: 806 KTPPPPPGXXXXXXFGXPXPXXPXXXXPPPP 898
+ PPPPP P P P PPPP
Sbjct: 462 QAPPPPPPPPPPPPPPPPPPPPPPPPFPPPP 492
Score = 29.1 bits (62), Expect = 5.1
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = +2
Query: 812 PPPPPGXXXXXXFGXPXPXXPXXXXPPPP 898
PPPPP P P P PPPP
Sbjct: 465 PPPPPPPPPPPPPPPPPPPPPPPFPPPPP 493
Score = 29.1 bits (62), Expect = 5.1
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = +2
Query: 812 PPPPPGXXXXXXFGXPXPXXPXXXXPPPP 898
PPPPP P P P PPPP
Sbjct: 466 PPPPPPPPPPPPPPPPPPPPPPFPPPPPP 494
>SB_812| Best HMM Match : FH2 (HMM E-Value=0)
Length = 1430
Score = 29.5 bits (63), Expect = 3.9
Identities = 14/32 (43%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
Frame = +2
Query: 812 PPPPPGXXXXXXFGXPXP--XXPXXXXPPPPG 901
PPPPPG P P P PPPPG
Sbjct: 653 PPPPPGGGMFPPPPPPPPGGGVPGPPKPPPPG 684
>SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1)
Length = 305
Score = 29.5 bits (63), Expect = 3.9
Identities = 12/30 (40%), Positives = 13/30 (43%)
Frame = +2
Query: 809 TPPPPPGXXXXXXFGXPXPXXPXXXXPPPP 898
+PPPPP P P P PPPP
Sbjct: 125 SPPPPPTSPATRAPPPPPPIAPATGGPPPP 154
>SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1597
Score = 29.1 bits (62), Expect = 5.1
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = +2
Query: 812 PPPPPGXXXXXXFGXPXPXXPXXXXPPPP 898
PPPPP P P P PPPP
Sbjct: 683 PPPPPPPPPPPPPPPPPPPQPSTPPPPPP 711
>SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)
Length = 514
Score = 29.1 bits (62), Expect = 5.1
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = +2
Query: 812 PPPPPGXXXXXXFGXPXPXXPXXXXPPPPG 901
PPPP G P P P PPPG
Sbjct: 377 PPPPIEGRPPSSLGNPPPPPPPGRGAPPPG 406
>SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 964
Score = 29.1 bits (62), Expect = 5.1
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = +2
Query: 815 PPPPGXXXXXXFGXPXPXXPXXXXPPPPG 901
PPPPG +G P P PPPPG
Sbjct: 514 PPPPGAGQG--WGQPPPGAGQGGGPPPPG 540
Score = 29.1 bits (62), Expect = 5.1
Identities = 20/62 (32%), Positives = 21/62 (33%), Gaps = 2/62 (3%)
Frame = +2
Query: 722 PPPXLXXXXXXPRXPGGGVXXXFXXXX--KKTPPPPPGXXXXXXFGXPXPXXPXXXXPPP 895
PPP P PG G + PPPPG G P P PPP
Sbjct: 536 PPPPGAGQGGGPPPPGAGQGWGQPPPGAGQGGGPPPPGAGQ----GGPPPPGAGQEGPPP 591
Query: 896 PG 901
PG
Sbjct: 592 PG 593
>SB_2292| Best HMM Match : Extensin_2 (HMM E-Value=0.033)
Length = 867
Score = 29.1 bits (62), Expect = 5.1
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = +2
Query: 812 PPPPPGXXXXXXFGXPXPXXPXXXXPPPP 898
PPPPP P P P PPPP
Sbjct: 204 PPPPPPRPPPSPPPPPPPPSPSPPRPPPP 232
>SB_34481| Best HMM Match : Extensin_2 (HMM E-Value=0.48)
Length = 341
Score = 28.7 bits (61), Expect = 6.8
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = +2
Query: 812 PPPPPGXXXXXXFGXPXPXXPXXXXPPPP 898
PPPPPG P P PPPP
Sbjct: 306 PPPPPGGAPPPPPPPPPPPPGDGGAPPPP 334
>SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 290
Score = 28.7 bits (61), Expect = 6.8
Identities = 17/59 (28%), Positives = 17/59 (28%), Gaps = 1/59 (1%)
Frame = +2
Query: 725 PPXLXXXXXXPRXPGGGVXXXFXXXXKKTP-PPPPGXXXXXXFGXPXPXXPXXXXPPPP 898
PP L P P P PPPP P P P PPPP
Sbjct: 157 PPPLYPPPPNPPPPNAPYPPPPYPPPPNPPYPPPPNPPYPPPPNAPNPPPPNPPYPPPP 215
>SB_59302| Best HMM Match : Collagen (HMM E-Value=0)
Length = 993
Score = 28.3 bits (60), Expect = 9.0
Identities = 16/48 (33%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Frame = -1
Query: 689 PXKXXXXPPXSPXXXFXPGXXGGGGPXXXKXFFXVXGPXXPP-LKGXP 549
P + PP P PG G GP K + GP PP +G P
Sbjct: 34 PYEAPPPPPGPPGPDGPPGFPGPQGPNGPKGPPGLPGPPGPPGFQGPP 81
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,156,594
Number of Sequences: 59808
Number of extensions: 366735
Number of successful extensions: 1136
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 905
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2597949818
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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