Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP03_F_E23
(902 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 37 0.017
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 37 0.017
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 37 0.017
AF045646-2|AAK29827.1| 371|Caenorhabditis elegans Collagen prot... 32 0.49
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 30 2.0
Z82081-2|CAE46685.1| 395|Caenorhabditis elegans Hypothetical pr... 30 2.6
Z82081-1|CAB04961.2| 396|Caenorhabditis elegans Hypothetical pr... 30 2.6
U64609-7|AAB04604.3| 373|Caenorhabditis elegans Sperm-specific ... 29 4.5
U40802-12|AAK19014.2| 265|Caenorhabditis elegans Sperm-specific... 29 4.5
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 29 4.5
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 29 4.5
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 29 4.5
Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical pr... 28 7.9
Z70208-1|CAA94141.1| 339|Caenorhabditis elegans Hypothetical pr... 28 7.9
V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein ( Caeno... 28 7.9
J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein ( C.ele... 28 7.9
AC006830-8|ABA00186.1| 289|Caenorhabditis elegans Hypothetical ... 28 7.9
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 37.1 bits (82), Expect = 0.017
Identities = 22/61 (36%), Positives = 23/61 (37%), Gaps = 2/61 (3%)
Frame = +2
Query: 722 PPPXLXXXXXXPRXPG--GGVXXXFXXXXKKTPPPPPGXXXXXXFGXPXPXXPXXXXPPP 895
PPP L P P GG+ PPPPPG G P P P PPP
Sbjct: 715 PPPGLPPITGGPPPPPPPGGLPPITGGPP---PPPPPGGLPPISGGPPPPPPPPGGCPPP 771
Query: 896 P 898
P
Sbjct: 772 P 772
Score = 28.3 bits (60), Expect = 7.9
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = +2
Query: 812 PPPPPGXXXXXXFGXPXPXXPXXXXPPPPG 901
PPPPP G P P P PP G
Sbjct: 727 PPPPPPGGLPPITGGPPPPPPPGGLPPISG 756
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 37.1 bits (82), Expect = 0.017
Identities = 22/61 (36%), Positives = 23/61 (37%), Gaps = 2/61 (3%)
Frame = +2
Query: 722 PPPXLXXXXXXPRXPG--GGVXXXFXXXXKKTPPPPPGXXXXXXFGXPXPXXPXXXXPPP 895
PPP L P P GG+ PPPPPG G P P P PPP
Sbjct: 715 PPPGLPPITGGPPPPPPPGGLPPITGGPP---PPPPPGGLPPISGGPPPPPPPPGGCPPP 771
Query: 896 P 898
P
Sbjct: 772 P 772
Score = 28.3 bits (60), Expect = 7.9
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = +2
Query: 812 PPPPPGXXXXXXFGXPXPXXPXXXXPPPPG 901
PPPPP G P P P PP G
Sbjct: 727 PPPPPPGGLPPITGGPPPPPPPGGLPPISG 756
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 37.1 bits (82), Expect = 0.017
Identities = 22/61 (36%), Positives = 23/61 (37%), Gaps = 2/61 (3%)
Frame = +2
Query: 722 PPPXLXXXXXXPRXPG--GGVXXXFXXXXKKTPPPPPGXXXXXXFGXPXPXXPXXXXPPP 895
PPP L P P GG+ PPPPPG G P P P PPP
Sbjct: 298 PPPGLPPITGGPPPPPPPGGLPPITGGPP---PPPPPGGLPPISGGPPPPPPPPGGCPPP 354
Query: 896 P 898
P
Sbjct: 355 P 355
Score = 28.3 bits (60), Expect = 7.9
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = +2
Query: 812 PPPPPGXXXXXXFGXPXPXXPXXXXPPPPG 901
PPPPP G P P P PP G
Sbjct: 310 PPPPPPGGLPPITGGPPPPPPPGGLPPISG 339
>AF045646-2|AAK29827.1| 371|Caenorhabditis elegans Collagen protein
103 protein.
Length = 371
Score = 32.3 bits (70), Expect = 0.49
Identities = 18/48 (37%), Positives = 18/48 (37%)
Frame = -3
Query: 897 GGGGXXXXGXXGXGXPKXXXXXXPGGGGGVFXXXXKKXXXTPPPGXRG 754
GGGG G G G GGGGG T PPG RG
Sbjct: 99 GGGGGGYGGGHGGGHGGAVGGGYGGGGGGGGGCQCSPSSNTCPPGPRG 146
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 30.3 bits (65), Expect = 2.0
Identities = 20/61 (32%), Positives = 21/61 (34%), Gaps = 1/61 (1%)
Frame = +2
Query: 722 PPPXLXXXXXXPRXPGG-GVXXXFXXXXKKTPPPPPGXXXXXXFGXPXPXXPXXXXPPPP 898
PPP P PGG G + PP G FG P P P PPP
Sbjct: 392 PPPSAFGAPQGPGGPGGYGPPPPGGPGAPGSYGPPQGGPGG--FGPPPPGGPGAYGPPPT 449
Query: 899 G 901
G
Sbjct: 450 G 450
>Z82081-2|CAE46685.1| 395|Caenorhabditis elegans Hypothetical
protein W09H1.1b protein.
Length = 395
Score = 29.9 bits (64), Expect = 2.6
Identities = 17/57 (29%), Positives = 25/57 (43%)
Frame = +3
Query: 237 NR*SQYLGFF*EIRSSSRPRRCDKTVAMTFLNSI*YNFIDGYQRQLRCRNKLLTCST 407
NR S + ++ +RC T LN + F+D QR R + +L CST
Sbjct: 257 NRSSSHFRYYLSYSLPETEQRCMMLTEDTKLNDMFDGFLDLVQRARRAKRNVLVCST 313
>Z82081-1|CAB04961.2| 396|Caenorhabditis elegans Hypothetical
protein W09H1.1a protein.
Length = 396
Score = 29.9 bits (64), Expect = 2.6
Identities = 17/57 (29%), Positives = 25/57 (43%)
Frame = +3
Query: 237 NR*SQYLGFF*EIRSSSRPRRCDKTVAMTFLNSI*YNFIDGYQRQLRCRNKLLTCST 407
NR S + ++ +RC T LN + F+D QR R + +L CST
Sbjct: 258 NRSSSHFRYYLSYSLPETEQRCMMLTEDTKLNDMFDGFLDLVQRARRAKRNVLVCST 314
>U64609-7|AAB04604.3| 373|Caenorhabditis elegans Sperm-specific
family, class qprotein 4 protein.
Length = 373
Score = 29.1 bits (62), Expect = 4.5
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = -3
Query: 897 GGGGXXXXGXXGXGXPKXXXXXXPGGGGG 811
GGGG G G G P GGGGG
Sbjct: 330 GGGGGAKSGGGGGGIPGQSVYMGAGGGGG 358
>U40802-12|AAK19014.2| 265|Caenorhabditis elegans Sperm-specific
family, class qprotein 3 protein.
Length = 265
Score = 29.1 bits (62), Expect = 4.5
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = -3
Query: 897 GGGGXXXXGXXGXGXPKXXXXXXPGGGGG 811
GGGG G G G P GGGGG
Sbjct: 224 GGGGGAKSGGGGGGIPGQSVYMGAGGGGG 252
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 29.1 bits (62), Expect = 4.5
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = +2
Query: 812 PPPPPGXXXXXXFGXPXPXXPXXXXPPPP 898
PPPP G G P P P PPPP
Sbjct: 240 PPPPKGSPPLAGSGSPPPP-PAAGSPPPP 267
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 29.1 bits (62), Expect = 4.5
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = +2
Query: 812 PPPPPGXXXXXXFGXPXPXXPXXXXPPPP 898
PPPP G G P P P PPPP
Sbjct: 261 PPPPKGSPPLAGSGSPPPP-PAAGSPPPP 288
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 29.1 bits (62), Expect = 4.5
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = +2
Query: 812 PPPPPGXXXXXXFGXPXPXXPXXXXPPPP 898
PPPP G G P P P PPPP
Sbjct: 246 PPPPKGSPPLAGSGSPPPP-PAAGSPPPP 273
>Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical
protein F23H12.4 protein.
Length = 301
Score = 28.3 bits (60), Expect = 7.9
Identities = 18/55 (32%), Positives = 19/55 (34%), Gaps = 1/55 (1%)
Frame = -1
Query: 704 GXXGXPXKXXXXPPXSPXXXFXPGXXGGGGPXXXKXFFXVXGPXXPP-LKGXPXP 543
G G P P +P PG G GP GP PP KG P P
Sbjct: 201 GPAGEPGTPAISEPLTPGAPGEPGDSGPPGPPGPPGAPGNDGPPGPPGPKGAPGP 255
>Z70208-1|CAA94141.1| 339|Caenorhabditis elegans Hypothetical
protein F54B11.1 protein.
Length = 339
Score = 28.3 bits (60), Expect = 7.9
Identities = 13/35 (37%), Positives = 14/35 (40%)
Frame = -1
Query: 668 PPXSPXXXFXPGXXGGGGPXXXKXFFXVXGPXXPP 564
PP P PG GG GP + GP PP
Sbjct: 192 PPGPPGLNGQPGLPGGMGPPGQSMSNVLPGPLGPP 226
>V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-1 coding for a collagen.
).
Length = 296
Score = 28.3 bits (60), Expect = 7.9
Identities = 18/55 (32%), Positives = 19/55 (34%), Gaps = 1/55 (1%)
Frame = -1
Query: 704 GXXGXPXKXXXXPPXSPXXXFXPGXXGGGGPXXXKXFFXVXGPXXPP-LKGXPXP 543
G G P P +P PG G GP GP PP KG P P
Sbjct: 196 GPAGEPGTPAISEPLTPGAPGEPGDSGPPGPPGPPGAPGNDGPPGPPGPKGAPGP 250
>J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 1 (col-1) gene, complete
cds. ).
Length = 296
Score = 28.3 bits (60), Expect = 7.9
Identities = 18/55 (32%), Positives = 19/55 (34%), Gaps = 1/55 (1%)
Frame = -1
Query: 704 GXXGXPXKXXXXPPXSPXXXFXPGXXGGGGPXXXKXFFXVXGPXXPP-LKGXPXP 543
G G P P +P PG G GP GP PP KG P P
Sbjct: 196 GPAGEPGTPAISEPLTPGAPGEPGDSGPPGPPGPPGAPGNDGPPGPPGPKGAPGP 250
>AC006830-8|ABA00186.1| 289|Caenorhabditis elegans Hypothetical
protein ZK105.8 protein.
Length = 289
Score = 28.3 bits (60), Expect = 7.9
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = -2
Query: 466 YFNIFFIKTHFKIGHIIQVSVLQVNSL 386
Y F I+THF+I I+ + VLQ+ SL
Sbjct: 62 YSKWFSIRTHFQINMILSLIVLQICSL 88
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,494,783
Number of Sequences: 27780
Number of extensions: 350929
Number of successful extensions: 1357
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1162
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2297313942
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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