Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_E23
         (902 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex det...    23   5.0  
DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex det...    23   5.0  
DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex det...    23   5.0  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    23   5.0  
S76959-1|AAB33934.1|   85|Apis mellifera olfactory receptor prot...    22   6.7  
DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex det...    22   6.7  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    22   6.7  

>DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +1

Query: 337 SNIISLTATNDNYVVEINC*LVVHLPV*YGQF 432
           +N   L   N NY+ +I   + V +PV YG F
Sbjct: 95  NNYKKLQYYNINYIEQIPVPVPVPVPVYYGNF 126


>DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +1

Query: 337 SNIISLTATNDNYVVEINC*LVVHLPV*YGQF 432
           +N   L   N NY+ +I   + V +PV YG F
Sbjct: 95  NNYKKLQYYNINYIEQIPVPVPVPVPVYYGNF 126


>DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +1

Query: 337 SNIISLTATNDNYVVEINC*LVVHLPV*YGQF 432
           +N   L   N NY+ +I   + V +PV YG F
Sbjct: 95  NNYKKLQYYNINYIEQIPVPVPVPVPVYYGNF 126


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +1

Query: 337 SNIISLTATNDNYVVEINC*LVVHLPV*YGQF 432
           +N   L   N NY+ +I   + V +PV YG F
Sbjct: 328 NNYKKLQYYNINYIEQIPVPVPVPVPVYYGNF 359


>S76959-1|AAB33934.1|   85|Apis mellifera olfactory receptor
           protein.
          Length = 85

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 11/43 (25%), Positives = 21/43 (48%)
 Frame = +2

Query: 137 LFLNTYSTVIPV*FIIIHISPGRNWVKSFSNT*KPLITVSGFF 265
           + L +Y+ ++   F I+H+S    W K+       +I V  F+
Sbjct: 25  IILISYALIL---FNILHMSSAEGWFKAIGTCGSHIIIVGLFY 64


>DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex
           determiner protein.
          Length = 176

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +1

Query: 337 SNIISLTATNDNYVVEINC*LVVHLPV*YGQF 432
           +N   L   N NY+ +I   + + +PV YG F
Sbjct: 95  NNYKKLQYYNINYIEQIPVPVPIPVPVYYGNF 126


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 324 FLNSI*YNFIDGYQRQLRC 380
           FLNS   +FID  Q+ L+C
Sbjct: 127 FLNSESKDFIDFIQKNLQC 145


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,818
Number of Sequences: 438
Number of extensions: 5191
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29267238
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)