Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_E22
         (834 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g28820.1 68416.m03596 expressed protein  ; expression support...    31   1.2  
At3g28810.1 68416.m03595 hypothetical protein                          31   1.2  
At2g40820.1 68415.m05038 proline-rich family protein contains pr...    30   1.6  
At1g34150.1 68414.m04236 tRNA pseudouridine synthase family prot...    30   2.2  

>At3g28820.1 68416.m03596 expressed protein  ; expression supported
           by MPSS
          Length = 434

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/36 (41%), Positives = 24/36 (66%)
 Frame = -1

Query: 204 TLIYSCSXSTSSVLGASVALEASAHTARSEGKQSQS 97
           T++ S + S SS   +SV  EAS+  ++S GK+S+S
Sbjct: 183 TMVSSTTNSASSNEESSVGKEASSENSKSSGKESES 218


>At3g28810.1 68416.m03595 hypothetical protein 
          Length = 434

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/36 (41%), Positives = 24/36 (66%)
 Frame = -1

Query: 204 TLIYSCSXSTSSVLGASVALEASAHTARSEGKQSQS 97
           T++ S + S SS   +SV  EAS+  ++S GK+S+S
Sbjct: 183 TMVSSTTNSASSNEESSVGKEASSENSKSSGKESES 218


>At2g40820.1 68415.m05038 proline-rich family protein contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 903

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +1

Query: 628 PYXLPXIAPLTPSNTTGYLEPLHVPKXRHVLRLPPESTT 744
           PY  P + P  P   +GY+ P ++P   +V  +P  S++
Sbjct: 804 PYYPPPMQPAPPPMNSGYM-PTYIPNSENVTNIPSSSSS 841


>At1g34150.1 68414.m04236 tRNA pseudouridine synthase family protein
           similar to pseudouridine synthase 3 [Mus musculus]
           GI:9652099; contains Pfam profile PF01416: tRNA
           pseudouridine synthase
          Length = 446

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 18/49 (36%), Positives = 22/49 (44%)
 Frame = +3

Query: 93  DETDFVCLRSSPCVRWLLTPHLHQELMTYXRSSCI*VSSLXNTXPLSPN 239
           +  DF+C   SP     L  H   E +TY   S I   +L N  PLS N
Sbjct: 350 ENVDFIC---SPGAAESLRSHFKNESLTYQLESVIYQEALRNCLPLSNN 395


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,393,197
Number of Sequences: 28952
Number of extensions: 235363
Number of successful extensions: 523
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 523
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1921616800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)