Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_E20
         (894 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    32   0.13 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   1.6  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   1.6  
SPAC688.13 |scn1||TatD DNase family Scn1|Schizosaccharomyces pom...    26   6.3  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 31.9 bits (69), Expect = 0.13
 Identities = 27/75 (36%), Positives = 27/75 (36%), Gaps = 2/75 (2%)
 Frame = -3

Query: 598 GGXKNXPPXGGGFFX*XKGGGXXPPXXFFFLXGGAXXXXPXXGG--GGPXXXGGXPPPPX 425
           GG    PP G G F    G G           GG        GG  GGP   GG  P   
Sbjct: 194 GGGSGGPPPGPGGFGGFGGFGGEGHHH-----GGHGGFGGGPGGFEGGPGGFGGG-PGGF 247

Query: 424 GGXXXKKGGXPXGFG 380
           GG     GG P GFG
Sbjct: 248 GGGLGGFGGGPGGFG 262


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 17/57 (29%), Positives = 18/57 (31%)
 Frame = +3

Query: 705 PPPPXXPXXXGAXXPPPXFFFFXXXAPXXPPQXXGGGGGGXGXIXFFXGXAPXPPPP 875
           PPPP  P       PP          P  PP       G    +      AP PPPP
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSI-PLPPQGRSAPPPPPP 366


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 15/37 (40%), Positives = 15/37 (40%)
 Frame = +3

Query: 705 PPPPXXPXXXGAXXPPPXFFFFXXXAPXXPPQXXGGG 815
           PPPP  P   GA  PPP         P  PP    GG
Sbjct: 762 PPPPPPPGVAGAGPPPP---------PPPPPAVSAGG 789



 Score = 26.2 bits (55), Expect = 6.3
 Identities = 13/40 (32%), Positives = 13/40 (32%)
 Frame = +3

Query: 705 PPPPXXPXXXGAXXPPPXFFFFXXXAPXXPPQXXGGGGGG 824
           P PP  P   G   PPP         P  PP       GG
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGG 789



 Score = 23.0 bits (47), Expect(2) = 2.6
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = -3

Query: 829 PXPPPPPPXXWGG 791
           P PPPPP    GG
Sbjct: 777 PPPPPPPAVSAGG 789



 Score = 22.6 bits (46), Expect(2) = 2.6
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 844 KKXIXPXPPPPPP 806
           +K +   PPPPPP
Sbjct: 725 QKLLLKSPPPPPP 737


>SPAC688.13 |scn1||TatD DNase family Scn1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 335

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -1

Query: 141 LXRFSV*KV*IEPIFIXSLDFNTRFNSLLQNLKG 40
           + +FS  KV  E  +  S+  N+R+ + +Q LKG
Sbjct: 247 ISQFSAHKVPTEFYYSFSIGINSRYKNFIQTLKG 280


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,501,632
Number of Sequences: 5004
Number of extensions: 41104
Number of successful extensions: 237
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)