Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_E19
         (840 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G8.13c |mst2||histone acetyltransferase Mst2|Schizosacchar...    27   3.3  
SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr 3||...    26   5.8  

>SPAC17G8.13c |mst2||histone acetyltransferase
           Mst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 407

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 24/82 (29%), Positives = 34/82 (41%)
 Frame = +3

Query: 270 AKEYNIEKSCXKYMNVDVVKQFMEMYKMGMLPRGETFVHTNELQMEXAVKVFRAPLLR*G 449
           AK   I +SC KYMN D V Q  +M      P G+      E+  +  + +F     R  
Sbjct: 128 AKNLYICESCLKYMNSDHVLQRHKMKCSWSYPPGD------EIYRDKNISIFEVDGQRQP 181

Query: 450 LRCFHEDCVLDERKDHGGMFVY 515
           + C    C+L +   H  M  Y
Sbjct: 182 IYC-QNLCLLAKMFLHSKMLYY 202


>SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 454

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +2

Query: 155 LHQGNQW*TLXMKMKELCIMKLL 223
           LH GNQW  L M  KELC + +L
Sbjct: 305 LHNGNQWEGLQM-AKELCGVSVL 326


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,706,486
Number of Sequences: 5004
Number of extensions: 45944
Number of successful extensions: 75
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)