Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_E18
         (867 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g07390.1 68418.m00846 respiratory burst oxidase protein A (Rb...    31   1.00 
At1g68170.1 68414.m07787 nodulin MtN21 family protein similar to...    29   3.0  
At1g47128.1 68414.m05222 cysteine proteinase (RD21A) / thiol pro...    29   4.0  
At5g45050.2 68418.m05524 disease resistance protein-related simi...    29   5.3  
At5g45050.1 68418.m05523 disease resistance protein-related simi...    29   5.3  
At4g29910.1 68417.m04256 origin recognition complex subunit 5-re...    29   5.3  
At3g55480.2 68416.m06162 adaptin family protein similar to AP-3 ...    29   5.3  
At3g55480.1 68416.m06161 adaptin family protein similar to AP-3 ...    29   5.3  
At3g20830.1 68416.m02634 protein kinase family protein contains ...    28   7.0  
At4g36860.2 68417.m05227 LIM domain-containing protein low simil...    28   9.3  
At4g36860.1 68417.m05226 LIM domain-containing protein low simil...    28   9.3  

>At5g07390.1 68418.m00846 respiratory burst oxidase protein A
           (RbohA) / NADPH oxidase identical to respiratory burst
           oxidase protein A from Arabidopsis thaliana [gi:3242781]
          Length = 902

 Score = 31.1 bits (67), Expect = 1.00
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +2

Query: 536 RPPDEHHKNRRSSQRWRNPTGLXRYQAFPPWKAPS 640
           RPPDEH  NR  S+ W       R     P+ AP+
Sbjct: 667 RPPDEHRLNRADSKHWDYIPDFPRILIDGPYGAPA 701


>At1g68170.1 68414.m07787 nodulin MtN21 family protein similar to
           MtN21 GI:2598575 (root nodule development) from
           [Medicago truncatula]
          Length = 356

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 20/46 (43%), Positives = 25/46 (54%)
 Frame = -3

Query: 523 KRQQRXLFTVPGLLLAFCSHVLSCVIPLILWITVLPPLSELIPLAA 386
           +R++R  FT   +LLA  S +L  VIP IL IT L   S     AA
Sbjct: 54  QRKKRPEFTCRLMLLALLSGLLGVVIPSILTITGLALTSATFTSAA 99


>At1g47128.1 68414.m05222 cysteine proteinase (RD21A) / thiol
           protease identical to SP|P43297 Cysteine proteinase
           RD21A precursor (EC 3.4.22.-) {Arabidopsis thaliana},
           thiol protease RD21A SP:P43297 from [Arabidopsis
           thaliana]
          Length = 462

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 15/29 (51%), Positives = 16/29 (55%)
 Frame = -2

Query: 740 DTYSVSYEXAPRFPKGERRTGIR*AARVG 654
           D Y   Y  A    KGERRT +R  ARVG
Sbjct: 106 DEYRSKYLGAKMEKKGERRTSLRYEARVG 134


>At5g45050.2 68418.m05524 disease resistance protein-related similar
            to NL27 [Solanum tuberosum] GI:3947735; contains Pfam
            profiles PF03106: WRKY DNA -binding domain, PF00931:
            NB-ARC domain, PF00560: Leucine Rich Repeat
          Length = 1344

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +2

Query: 344  PLPRSLTRCARSFGCGERYQLTQRR 418
            P PRS  RCA S GC  R Q+ + R
Sbjct: 1169 PYPRSYYRCASSKGCFARKQVERSR 1193


>At5g45050.1 68418.m05523 disease resistance protein-related similar
            to NL27 [Solanum tuberosum] GI:3947735; contains Pfam
            profiles PF03106: WRKY DNA -binding domain, PF00931:
            NB-ARC domain, PF00560: Leucine Rich Repeat
          Length = 1372

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +2

Query: 344  PLPRSLTRCARSFGCGERYQLTQRR 418
            P PRS  RCA S GC  R Q+ + R
Sbjct: 1197 PYPRSYYRCASSKGCFARKQVERSR 1221


>At4g29910.1 68417.m04256 origin recognition complex subunit
           5-related (ORC5) contains weak similarity to Origin
           recognition complex subunit 5 (Swiss-Prot:Q9WUV0) [Mus
           musculus]
          Length = 534

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +1

Query: 547 RASQKSTLKSEVAKPDRTXKIPGVSPLESSL 639
           +AS+KS  K E+A+ +   K PG  PLE  L
Sbjct: 412 KASEKSMEKKEIAEQEAVMKGPGSFPLERLL 442


>At3g55480.2 68416.m06162 adaptin family protein similar to AP-3
            complex beta3A subunit, Homo sapiens, SP|O00203; contains
            Pfam profile: PF01602 Adaptin N terminal region
          Length = 987

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = -3

Query: 490  GLLLAFCSHVLSCVIPLILWITVLPPLSELIPL 392
            GL L F S +LS  IPL++ ITV    +E++ L
Sbjct: 924  GLRLRFSSKILSSEIPLLITITVEGKCTEVLNL 956


>At3g55480.1 68416.m06161 adaptin family protein similar to AP-3
            complex beta3A subunit, Homo sapiens, SP|O00203; contains
            Pfam profile: PF01602 Adaptin N terminal region
          Length = 987

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = -3

Query: 490  GLLLAFCSHVLSCVIPLILWITVLPPLSELIPL 392
            GL L F S +LS  IPL++ ITV    +E++ L
Sbjct: 924  GLRLRFSSKILSSEIPLLITITVEGKCTEVLNL 956


>At3g20830.1 68416.m02634 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 408

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -2

Query: 335 PIRKPPLPARWPIH*CRKNLPHL 267
           P   PP P R P H CRKN P +
Sbjct: 384 PSSAPPSPLRSPPHVCRKNDPFI 406


>At4g36860.2 68417.m05227 LIM domain-containing protein low
           similarity to LIM-domain protein [Branchiostoma
           floridae] GI:3360516, DRAL/Slim3/FHL2 [Homo sapiens]
           GI:7209525; contains Pfam profile PF00412: LIM domain
          Length = 547

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
 Frame = +2

Query: 524 FHRLRPPDEHHKNRRSSQRW--RNPTGLXRYQAFPPWKAPSC 643
           +H+L   ++HH        +   NP GL  Y+A P W    C
Sbjct: 228 YHKLCYKEQHHPKCDVCHNFIPTNPAGLIEYRAHPFWMQKYC 269


>At4g36860.1 68417.m05226 LIM domain-containing protein low
           similarity to LIM-domain protein [Branchiostoma
           floridae] GI:3360516, DRAL/Slim3/FHL2 [Homo sapiens]
           GI:7209525; contains Pfam profile PF00412: LIM domain
          Length = 351

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
 Frame = +2

Query: 524 FHRLRPPDEHHKNRRSSQRW--RNPTGLXRYQAFPPWKAPSC 643
           +H+L   ++HH        +   NP GL  Y+A P W    C
Sbjct: 32  YHKLCYKEQHHPKCDVCHNFIPTNPAGLIEYRAHPFWMQKYC 73


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,089,282
Number of Sequences: 28952
Number of extensions: 376751
Number of successful extensions: 891
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 870
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 891
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2028915200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)