Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_E17
         (880 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun...    56   7e-09
SPBC646.14c |orc5||origin recognition complex subunit Orc5|Schiz...    26   8.1  

>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 214

 Score = 56.0 bits (129), Expect = 7e-09
 Identities = 26/49 (53%), Positives = 33/49 (67%), Gaps = 1/49 (2%)
 Frame = +1

Query: 163 YLAEKSYVSGYTPSQADVQVFEQVGKAP-AANLPHVLRWYNQIASYTSA 306
           +L +KS++ GY PSQAD  VF+ VG AP  A  P+  RWY QIA+Y  A
Sbjct: 18  FLLDKSFIEGYEPSQADAVVFKAVGVAPDTAKYPNGARWYKQIATYDLA 66



 Score = 48.4 bits (110), Expect = 1e-06
 Identities = 25/60 (41%), Positives = 31/60 (51%)
 Frame = +2

Query: 404 VDLFGSGXXXXXXXXXXXXXXXLKAYADXKSKKPALIXKSSILLDVKPWDDETDMKEMEK 583
           +DLFGS                 + Y   K+ KP  + KS + LDVKPWDDET M E+EK
Sbjct: 91  IDLFGSDEEEDPEAERIKAERVAE-YNKKKAAKPKAVHKSLVTLDVKPWDDETPMDELEK 149



 Score = 29.9 bits (64), Expect = 0.50
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +1

Query: 622 GASKLVPVGYGINKLXXMCVI 684
           G SKLVPVG+G+NK     V+
Sbjct: 162 GLSKLVPVGFGVNKFQINLVV 182


>SPBC646.14c |orc5||origin recognition complex subunit
           Orc5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 455

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +1

Query: 157 TKYLAEKSYVSGYTPSQADVQVF 225
           +KYL   ++++ Y PS+ D Q F
Sbjct: 304 SKYLLVSAFLASYNPSRLDAQFF 326


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,676,795
Number of Sequences: 5004
Number of extensions: 47759
Number of successful extensions: 110
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)