Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP03_F_E17
(880 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_04_0016 + 16461542-16461566,16462701-16462732,16463015-164631... 48 1e-05
07_03_1580 + 27888275-27888360,27888755-27888871,27888964-278890... 47 2e-05
07_03_1260 - 25260872-25261101,25261199-25261312,25261473-252615... 44 1e-04
04_04_0794 + 28104725-28104829,28105721-28105762,28106470-281065... 29 3.7
01_06_1167 - 35062766-35062870,35063165-35063228,35063647-350637... 29 3.7
01_07_0025 + 40565296-40565497,40565591-40566075 29 6.5
01_01_0362 - 2843659-2844468,2844669-2844699,2844824-2844903,284... 28 8.6
>03_04_0016 +
16461542-16461566,16462701-16462732,16463015-16463100,
16463189-16463305,16463399-16463474,16463695-16463818,
16464482-16464595,16464700-16464947
Length = 273
Score = 48.0 bits (109), Expect = 1e-05
Identities = 20/45 (44%), Positives = 31/45 (68%)
Frame = +1
Query: 160 KYLAEKSYVSGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQIAS 294
+YL +SY+SGY S+ D+ VF + APAA+ +V RWY+ I++
Sbjct: 38 EYLLTRSYISGYQASKDDMTVFTSLPSAPAASYVNVTRWYDHISA 82
Score = 44.4 bits (100), Expect = 1e-04
Identities = 21/37 (56%), Positives = 26/37 (70%)
Frame = +2
Query: 473 KAYADXKSKKPALIXKSSILLDVKPWDDETDMKEMEK 583
+A A S K KSS+LLDVKPWDDETDM ++E+
Sbjct: 141 RAAAVKASGKKKESGKSSVLLDVKPWDDETDMAKLEE 177
Score = 35.5 bits (78), Expect = 0.057
Identities = 17/29 (58%), Positives = 19/29 (65%)
Frame = +1
Query: 598 LKWKAFSGGASKLVPVGYGINKLXXMCVI 684
+K + GASKLVPVGYGI KL M I
Sbjct: 182 VKMEGLLWGASKLVPVGYGIKKLQIMMTI 210
>07_03_1580 +
27888275-27888360,27888755-27888871,27888964-27889045,
27889710-27889821,27889958-27890071,27890163-27890326
Length = 224
Score = 47.2 bits (107), Expect = 2e-05
Identities = 21/34 (61%), Positives = 25/34 (73%)
Frame = +2
Query: 482 ADXKSKKPALIXKSSILLDVKPWDDETDMKEMEK 583
A S K KSS+LLDVKPWDDETDMK++E+
Sbjct: 123 ASKASSKKKESGKSSVLLDVKPWDDETDMKKLEE 156
Score = 44.0 bits (99), Expect = 2e-04
Identities = 18/45 (40%), Positives = 29/45 (64%)
Frame = +1
Query: 160 KYLAEKSYVSGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQIAS 294
++L+ K+YVSG S+ D++VF V P A P+ RWY+ +A+
Sbjct: 19 QHLSGKTYVSGNAISKDDIKVFAAVPSKPGAEFPNAARWYDTVAA 63
Score = 35.1 bits (77), Expect = 0.075
Identities = 16/29 (55%), Positives = 20/29 (68%)
Frame = +1
Query: 598 LKWKAFSGGASKLVPVGYGINKLXXMCVI 684
++ + + GASKLVPVGYGI KL M I
Sbjct: 161 VQMEGLTWGASKLVPVGYGIKKLQIMLTI 189
>07_03_1260 -
25260872-25261101,25261199-25261312,25261473-25261596,
25261755-25261839,25261917-25262033,25262122-25262207
Length = 251
Score = 44.4 bits (100), Expect = 1e-04
Identities = 21/37 (56%), Positives = 26/37 (70%)
Frame = +2
Query: 473 KAYADXKSKKPALIXKSSILLDVKPWDDETDMKEMEK 583
+A A S K KSS+LLDVKPWDDETDM ++E+
Sbjct: 125 RAAAVKASGKKKESGKSSVLLDVKPWDDETDMTKLEE 161
Score = 41.1 bits (92), Expect = 0.001
Identities = 16/43 (37%), Positives = 26/43 (60%)
Frame = +1
Query: 160 KYLAEKSYVSGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQI 288
+YL +SY+SGY S D+ V+ AP+++ +V RW+ I
Sbjct: 19 EYLLTRSYISGYQASNDDLAVYSAFSTAPSSSYTNVARWFTHI 61
Score = 35.5 bits (78), Expect = 0.057
Identities = 17/29 (58%), Positives = 19/29 (65%)
Frame = +1
Query: 598 LKWKAFSGGASKLVPVGYGINKLXXMCVI 684
+K + GASKLVPVGYGI KL M I
Sbjct: 166 VKMEGLLWGASKLVPVGYGIKKLQIMMTI 194
>04_04_0794 +
28104725-28104829,28105721-28105762,28106470-28106544,
28106811-28106950,28107036-28107093,28107239-28107241,
28107740-28107849,28108562-28108648,28108773-28108856,
28109212-28109277,28109377-28109488,28109949-28110149
Length = 360
Score = 29.5 bits (63), Expect = 3.7
Identities = 14/28 (50%), Positives = 15/28 (53%)
Frame = +1
Query: 37 DLCSYSFSHPAVWLSRKSCYTKRNYGCR 120
D C F H VWL +C KRNY CR
Sbjct: 152 DKCVLQFDHHCVWLG--TCIAKRNY-CR 176
>01_06_1167 -
35062766-35062870,35063165-35063228,35063647-35063738,
35064137-35064205,35064322-35064412,35064509-35064732,
35065064-35065180,35065583-35065651,35066172-35066237,
35066335-35066505,35066581-35066661,35067620-35067700
Length = 409
Score = 29.5 bits (63), Expect = 3.7
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 9/50 (18%)
Frame = +1
Query: 166 LAEKSYV--SGYTPSQADVQVFEQV-------GKAPAANLPHVLRWYNQI 288
L++KS + +G+ PS AD+ VF + G+ PHVLRW + I
Sbjct: 83 LSQKSVLLGNGFKPSVADIVVFATIQVFVSHLGENELQKYPHVLRWMDYI 132
>01_07_0025 + 40565296-40565497,40565591-40566075
Length = 228
Score = 28.7 bits (61), Expect = 6.5
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 4/35 (11%)
Frame = -1
Query: 379 CW----GGSRGFSTGGQWAGAPETMFCVQPKCMKQ 287
CW GGSR GG W + + V P+C K+
Sbjct: 84 CWRRGGGGSRAGGGGGAWRASGKEKLVVAPRCGKR 118
>01_01_0362 -
2843659-2844468,2844669-2844699,2844824-2844903,
2846680-2847831
Length = 690
Score = 28.3 bits (60), Expect = 8.6
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = -3
Query: 686 WM-THIXXSLFMPYPTGTSLEAPPEKAFHFNSGYLVFPFPS 567
W+ T I L +PYP + + P EK F+FN G ++ + S
Sbjct: 329 WLRTVIRIPLAVPYPDYSHICQPREKWFNFNRGSMLVLYRS 369
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,393,588
Number of Sequences: 37544
Number of extensions: 351151
Number of successful extensions: 811
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 811
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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