Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_E17
         (880 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59042| Best HMM Match : No HMM Matches (HMM E-Value=.)              69   7e-12
SB_52162| Best HMM Match : No HMM Matches (HMM E-Value=.)              55   9e-08

>SB_59042| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 225

 Score = 68.5 bits (160), Expect = 7e-12
 Identities = 28/45 (62%), Positives = 33/45 (73%)
 Frame = +1

Query: 163 YLAEKSYVSGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQIASY 297
           +L E+SY+ GY PSQAD  VFE +  AP A+LPH LRWYN I SY
Sbjct: 18  FLTERSYIEGYVPSQADAVVFEALKSAPPASLPHALRWYNHIVSY 62



 Score = 66.9 bits (156), Expect = 2e-11
 Identities = 32/60 (53%), Positives = 38/60 (63%)
 Frame = +2

Query: 404 VDLFGSGXXXXXXXXXXXXXXXLKAYADXKSKKPALIXKSSILLDVKPWDDETDMKEMEK 583
           +DLFGS                LKAY + K+KK  +I KS+I+LDVKPWDDETDM EMEK
Sbjct: 101 IDLFGSDDEEEEKEAARIRQERLKAYEEKKAKKKPVIAKSNIMLDVKPWDDETDMAEMEK 160



 Score = 29.9 bits (64), Expect = 2.8
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = +1

Query: 622 GASKLVPVGYGINKLXXMCVI 684
           GASKLVP+ YGI KL    V+
Sbjct: 173 GASKLVPLAYGIKKLQITVVV 193


>SB_52162| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 81

 Score = 54.8 bits (126), Expect = 9e-08
 Identities = 23/35 (65%), Positives = 25/35 (71%)
 Frame = +1

Query: 193 YTPSQADVQVFEQVGKAPAANLPHVLRWYNQIASY 297
           Y PSQAD  VFE +  AP A+LPH LRWYN I SY
Sbjct: 2   YVPSQADAVVFEALKSAPPASLPHALRWYNHIVSY 36


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,196,712
Number of Sequences: 59808
Number of extensions: 360443
Number of successful extensions: 891
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 888
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2502612210
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)