Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_E14
         (855 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein S26|Schizosa...    96   6e-21
SPAC806.03c |rps2601|rps26-1, rps26|40S ribosomal protein S26|Sc...    92   1e-19
SPCC126.15c |sec65||signal recognition particle subunit Sec65 |S...    29   1.1  

>SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein
           S26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 119

 Score = 95.9 bits (228), Expect = 6e-21
 Identities = 42/65 (64%), Positives = 51/65 (78%)
 Frame = +2

Query: 80  MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASXIP 259
           MT+KRRN GR KHGRGHVK VRC NC+R VPKDKAIK++ IRN+VE AA+RD+++AS   
Sbjct: 1   MTQKRRNNGRNKHGRGHVKFVRCINCSRAVPKDKAIKRWTIRNMVETAAIRDLSEASVYS 60

Query: 260 NVPAP 274
               P
Sbjct: 61  EYTIP 65



 Score = 66.5 bits (155), Expect = 5e-12
 Identities = 33/59 (55%), Positives = 42/59 (71%), Gaps = 3/59 (5%)
 Frame = +3

Query: 255 YPMFQLPKLYAKLHYCVSCAIHSKVVRNRSKKDRRIRT-PPKSNFPRDMSR--PQAVQR 422
           Y  + +PKLY KL YCVSCAIHS+VVR RS++ RRIRT PP+  + RD  +  P AV +
Sbjct: 59  YSEYTIPKLYIKLQYCVSCAIHSRVVRVRSREGRRIRTPPPRVRYNRDGKKVNPTAVAK 117


>SPAC806.03c |rps2601|rps26-1, rps26|40S ribosomal protein
           S26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 120

 Score = 91.9 bits (218), Expect = 1e-19
 Identities = 41/65 (63%), Positives = 50/65 (76%)
 Frame = +2

Query: 80  MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASXIP 259
           MT+KRRN GR KHGRGH K VRC NC+R VPKDKAIK++ IRN+VE AA+RD+++AS   
Sbjct: 1   MTQKRRNCGRNKHGRGHTKFVRCINCSRAVPKDKAIKRWNIRNMVETAAIRDLSEASVYS 60

Query: 260 NVPAP 274
               P
Sbjct: 61  EYAIP 65



 Score = 65.7 bits (153), Expect = 8e-12
 Identities = 31/59 (52%), Positives = 42/59 (71%), Gaps = 3/59 (5%)
 Frame = +3

Query: 255 YPMFQLPKLYAKLHYCVSCAIHSKVVRNRSKKDRRIRT-PPKSNFPRDMSR--PQAVQR 422
           Y  + +PK+Y KL YCVSCAIH++VVR RS++ RRIRT PP+  + RD  R  P A+ +
Sbjct: 59  YSEYAIPKIYVKLQYCVSCAIHARVVRVRSREGRRIRTPPPRVRYNRDGKRVNPAAIAK 117


>SPCC126.15c |sec65||signal recognition particle subunit Sec65
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 199

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 15/26 (57%), Positives = 18/26 (69%)
 Frame = +2

Query: 161 RCVPKDKAIKKFVIRNIVEAAAVRDI 238
           RCVPKDKAI   + +NI  A  VRD+
Sbjct: 20  RCVPKDKAILNPLAKNI--ADVVRDL 43


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,073,808
Number of Sequences: 5004
Number of extensions: 56138
Number of successful extensions: 127
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)