Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_E14
         (855 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1177 + 35147036-35147038,35147128-35147220,35147322-351474...    98   7e-21
03_02_0071 + 5425722-5427154,5427259-5427464,5428445-5428686,542...    29   3.6  

>01_06_1177 +
           35147036-35147038,35147128-35147220,35147322-35147406,
           35147588-35147760
          Length = 117

 Score = 98.3 bits (234), Expect = 7e-21
 Identities = 41/56 (73%), Positives = 49/56 (87%)
 Frame = +2

Query: 80  MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDA 247
           MT KRRNGGR KHGRGHVK +RC+NCA+C PKDKAIK+F +RNIVE AA+RD+ +A
Sbjct: 1   MTFKRRNGGRNKHGRGHVKYIRCSNCAKCCPKDKAIKRFQVRNIVEQAAIRDVQEA 56



 Score = 60.5 bits (140), Expect = 2e-09
 Identities = 27/49 (55%), Positives = 38/49 (77%)
 Frame = +3

Query: 264 FQLPKLYAKLHYCVSCAIHSKVVRNRSKKDRRIRTPPKSNFPRDMSRPQ 410
           + LPKLYAK+H+CVSCAIH+ +VR RS+++RR R PP+  F R +  P+
Sbjct: 62  YVLPKLYAKVHHCVSCAIHAHIVRVRSRENRRDRRPPE-RFRRRVPDPR 109


>03_02_0071 +
           5425722-5427154,5427259-5427464,5428445-5428686,
           5428788-5429570
          Length = 887

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 18/50 (36%), Positives = 19/50 (38%)
 Frame = -2

Query: 851 TNPSARRVQWXXEXRKEXPQIPQNXPXPRGXGPDSLNARKNPPHTSPPEP 702
           T+PS R VQ         P  P   P P    P  LN    PP   PP P
Sbjct: 336 TSPSPRPVQ----PSNAPPPPPPPPPPPPPPPPPKLNTAPKPPPPPPPPP 381


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,651,497
Number of Sequences: 37544
Number of extensions: 428892
Number of successful extensions: 1205
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1099
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1199
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2385713652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)