Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_E14
         (855 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13168| Best HMM Match : Ribosomal_S26e (HMM E-Value=0)             111   7e-25
SB_41532| Best HMM Match : Extensin_2 (HMM E-Value=1.4)                29   6.4  
SB_5524| Best HMM Match : Glyco_hydro_31 (HMM E-Value=1.7e-10)         28   8.4  
SB_32762| Best HMM Match : Extensin_2 (HMM E-Value=0.062)              28   8.4  

>SB_13168| Best HMM Match : Ribosomal_S26e (HMM E-Value=0)
          Length = 289

 Score =  111 bits (267), Expect = 7e-25
 Identities = 51/57 (89%), Positives = 54/57 (94%)
 Frame = +2

Query: 80  MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDAS 250
           MT+KR NGGR+KHGRGHVK VRCTNCARCVPKDK+IKKFVIRNIVEAAAVRDI DAS
Sbjct: 1   MTKKRCNGGRSKHGRGHVKFVRCTNCARCVPKDKSIKKFVIRNIVEAAAVRDIADAS 57



 Score = 79.0 bits (186), Expect = 5e-15
 Identities = 33/40 (82%), Positives = 37/40 (92%)
 Frame = +3

Query: 255 YPMFQLPKLYAKLHYCVSCAIHSKVVRNRSKKDRRIRTPP 374
           Y ++ LPKLY KLHYCVSCAIHSKVVRNRSK+DR+IRTPP
Sbjct: 59  YEVYALPKLYVKLHYCVSCAIHSKVVRNRSKEDRKIRTPP 98


>SB_41532| Best HMM Match : Extensin_2 (HMM E-Value=1.4)
          Length = 1633

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 18/41 (43%), Positives = 21/41 (51%)
 Frame = +2

Query: 44  RRSLFTGSEVRNMTRKRRNGGRAKHGRGHVKAVRCTNCARC 166
           RR+LFTG E     RK RN  + KH R   K  R  + A C
Sbjct: 683 RRNLFTGEEDLGEGRK-RNTKKDKHSRDKSKFSRRHSVAAC 722


>SB_5524| Best HMM Match : Glyco_hydro_31 (HMM E-Value=1.7e-10)
          Length = 718

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 10/39 (25%), Positives = 18/39 (46%)
 Frame = -3

Query: 295 WSLAYNLGSWNIGYXRGIVNISDRRRFYDVPNHELFDSL 179
           WSL + L  W     + + ++ +  R YD+P    F  +
Sbjct: 497 WSLGFMLSRWGYNSLKRVQDVVESMRKYDIPQDVQFGDI 535


>SB_32762| Best HMM Match : Extensin_2 (HMM E-Value=0.062)
          Length = 830

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 13/42 (30%), Positives = 17/42 (40%)
 Frame = -2

Query: 788 PQNXPXPRGXGPDSLNARKNPPHTSPPEPENIK*RQLXXGNL 663
           P   P P    P   N   +PP+T+P  P +        GNL
Sbjct: 298 PNTAPSPPNIAPSPPNIAPSPPNTAPSPPHSDPIAAALSGNL 339


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,725,225
Number of Sequences: 59808
Number of extensions: 446444
Number of successful extensions: 1081
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1080
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2431332827
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)