Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_E14
         (855 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92834-4|CAB07387.1|  117|Caenorhabditis elegans Hypothetical pr...    98   8e-21
AL132904-23|CAC35839.2|  312|Caenorhabditis elegans Hypothetical...    29   5.6  
AL132904-7|CAC35838.1|  430|Caenorhabditis elegans Hypothetical ...    29   5.6  
Z69634-3|CAA93454.4|  553|Caenorhabditis elegans Hypothetical pr...    28   7.4  
AF077540-8|AAC26310.2|  683|Caenorhabditis elegans Btb and math ...    28   7.4  
U93842-1|AAB52421.1| 1409|Caenorhabditis elegans regulator of pr...    28   9.7  
U49945-3|AAM51509.1| 1408|Caenorhabditis elegans Aboc, expulsion...    28   9.7  
U49945-2|AAC47926.1| 1409|Caenorhabditis elegans Aboc, expulsion...    28   9.7  

>Z92834-4|CAB07387.1|  117|Caenorhabditis elegans Hypothetical
           protein F39B2.6 protein.
          Length = 117

 Score = 97.9 bits (233), Expect = 8e-21
 Identities = 46/65 (70%), Positives = 48/65 (73%)
 Frame = +2

Query: 80  MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASXIP 259
           MT KRRN GR K  RGHV  +RCTNC RC PKDKAIKKFV+RNIVEAAAVRDI DAS   
Sbjct: 1   MTFKRRNHGRNKKNRGHVAFIRCTNCGRCCPKDKAIKKFVVRNIVEAAAVRDIGDASAYT 60

Query: 260 NVPAP 274
               P
Sbjct: 61  QYALP 65



 Score = 68.1 bits (159), Expect = 7e-12
 Identities = 28/40 (70%), Positives = 33/40 (82%)
 Frame = +3

Query: 255 YPMFQLPKLYAKLHYCVSCAIHSKVVRNRSKKDRRIRTPP 374
           Y  + LPKLY KLHYC++CAIHSKVVRNRS++ RR R PP
Sbjct: 59  YTQYALPKLYHKLHYCIACAIHSKVVRNRSREARRDRNPP 98


>AL132904-23|CAC35839.2|  312|Caenorhabditis elegans Hypothetical
           protein Y111B2A.10b protein.
          Length = 312

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = +2

Query: 128 HVKAVRCTNCARCVPKDKAIKKFVIRNIVEAA 223
           H+K ++C NC+     +K+++  +IR+  E A
Sbjct: 80  HLKEIQCDNCSLVFQSEKSLQSHIIRHHQEDA 111


>AL132904-7|CAC35838.1|  430|Caenorhabditis elegans Hypothetical
           protein Y111B2A.10a protein.
          Length = 430

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = +2

Query: 128 HVKAVRCTNCARCVPKDKAIKKFVIRNIVEAA 223
           H+K ++C NC+     +K+++  +IR+  E A
Sbjct: 198 HLKEIQCDNCSLVFQSEKSLQSHIIRHHQEDA 229


>Z69634-3|CAA93454.4|  553|Caenorhabditis elegans Hypothetical
           protein B0001.5 protein.
          Length = 553

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = +2

Query: 296 LLRVMRHPQQSCQEQIEERQKNPYSSQE*LP*GHVTSTGSAK 421
           ++ V + P +S   ++ + QKN Y+S E    GH TS+ +A+
Sbjct: 374 VINVYKEPSRSHANELYDSQKNQYTSHE----GHSTSSPTAE 411


>AF077540-8|AAC26310.2|  683|Caenorhabditis elegans Btb and math
           domain containingprotein 47 protein.
          Length = 683

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = -2

Query: 797 PQIPQNXP-XPRGXGPDSLNARKNPPHTSPPE 705
           PQ+PQ  P  P G  P S +A + P    PP+
Sbjct: 356 PQLPQKVPLFPSGGAPSSPSAPEAPSEPPPPK 387


>U93842-1|AAB52421.1| 1409|Caenorhabditis elegans regulator of
            presynaptic activity protein.
          Length = 1409

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -2

Query: 806  KEXPQIPQNXPXPRGXGPDSLNARKNPPHTSPPEPE 699
            +E P IP+  P P G  P      + PP   PP P+
Sbjct: 971  REAPPIPKRNPPPLGAPPKVPEGARAPP-PLPPRPK 1005


>U49945-3|AAM51509.1| 1408|Caenorhabditis elegans Aboc, expulsion
            defective protein3, isoform b protein.
          Length = 1408

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -2

Query: 806  KEXPQIPQNXPXPRGXGPDSLNARKNPPHTSPPEPE 699
            +E P IP+  P P G  P      + PP   PP P+
Sbjct: 971  REAPPIPKRNPPPLGAPPKVPEGARAPP-PLPPRPK 1005


>U49945-2|AAC47926.1| 1409|Caenorhabditis elegans Aboc, expulsion
            defective protein3, isoform a protein.
          Length = 1409

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -2

Query: 806  KEXPQIPQNXPXPRGXGPDSLNARKNPPHTSPPEPE 699
            +E P IP+  P P G  P      + PP   PP P+
Sbjct: 971  REAPPIPKRNPPPLGAPPKVPEGARAPP-PLPPRPK 1005


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,485,517
Number of Sequences: 27780
Number of extensions: 341009
Number of successful extensions: 904
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 896
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2129473654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)