Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_E14
         (855 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g56340.1 68416.m06264 40S ribosomal protein S26 (RPS26C) seve...    99   4e-21
At2g40590.1 68415.m05007 40S ribosomal protein S26 (RPS26B)            97   2e-20
At2g40510.1 68415.m04999 40S ribosomal protein S26 (RPS26A)            97   2e-20
At3g60200.1 68416.m06726 expressed protein hypothetical proteins...    30   2.3  
At2g19110.1 68415.m02231 ATPase E1-E2 type family protein / halo...    29   3.9  
At1g20130.1 68414.m02518 family II extracellular lipase, putativ...    29   3.9  
At3g14440.1 68416.m01830 9-cis-epoxycarotenoid dioxygenase, puta...    28   6.9  
At1g70140.1 68414.m08071 formin homology 2 domain-containing pro...    28   6.9  

>At3g56340.1 68416.m06264 40S ribosomal protein S26 (RPS26C) several
           40S ribosomal protein S26
          Length = 130

 Score = 98.7 bits (235), Expect = 4e-21
 Identities = 41/65 (63%), Positives = 50/65 (76%)
 Frame = +2

Query: 80  MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASXIP 259
           MT KRRNGGR KH RGHVK +RC+NC +C PKDKAIK+F++RNIVE AA+RD+ +AS   
Sbjct: 1   MTFKRRNGGRNKHNRGHVKPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

Query: 260 NVPAP 274
               P
Sbjct: 61  GYTLP 65



 Score = 66.1 bits (154), Expect = 3e-11
 Identities = 31/55 (56%), Positives = 36/55 (65%)
 Frame = +3

Query: 255 YPMFQLPKLYAKLHYCVSCAIHSKVVRNRSKKDRRIRTPPKSNFPRDMSRPQAVQ 419
           Y  + LPKLYAK  YCVSCAIHS VVR RS+ +RR+RTPP     R    P+  Q
Sbjct: 59  YEGYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFARRKEDTPKPAQ 113


>At2g40590.1 68415.m05007 40S ribosomal protein S26 (RPS26B) 
          Length = 131

 Score = 96.7 bits (230), Expect = 2e-20
 Identities = 40/65 (61%), Positives = 49/65 (75%)
 Frame = +2

Query: 80  MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASXIP 259
           MT KRRNGGR KH RGHV  +RC+NC +C PKDKAIK+F++RNIVE AA+RD+ +AS   
Sbjct: 1   MTFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

Query: 260 NVPAP 274
               P
Sbjct: 61  GYTLP 65



 Score = 64.9 bits (151), Expect = 6e-11
 Identities = 31/55 (56%), Positives = 36/55 (65%)
 Frame = +3

Query: 255 YPMFQLPKLYAKLHYCVSCAIHSKVVRNRSKKDRRIRTPPKSNFPRDMSRPQAVQ 419
           Y  + LPKLYAK  YCVSCAIHS VVR RS+ +RR+RTPP     R    P+  Q
Sbjct: 59  YEGYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFTRRKEDTPKPGQ 113


>At2g40510.1 68415.m04999 40S ribosomal protein S26 (RPS26A)
          Length = 133

 Score = 96.7 bits (230), Expect = 2e-20
 Identities = 40/65 (61%), Positives = 49/65 (75%)
 Frame = +2

Query: 80  MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASXIP 259
           MT KRRNGGR KH RGHV  +RC+NC +C PKDKAIK+F++RNIVE AA+RD+ +AS   
Sbjct: 1   MTFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

Query: 260 NVPAP 274
               P
Sbjct: 61  GYTLP 65



 Score = 64.9 bits (151), Expect = 6e-11
 Identities = 31/55 (56%), Positives = 36/55 (65%)
 Frame = +3

Query: 255 YPMFQLPKLYAKLHYCVSCAIHSKVVRNRSKKDRRIRTPPKSNFPRDMSRPQAVQ 419
           Y  + LPKLYAK  YCVSCAIHS VVR RS+ +RR+RTPP     R    P+  Q
Sbjct: 59  YEGYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFARRKEDTPKPGQ 113


>At3g60200.1 68416.m06726 expressed protein hypothetical proteins
           At2g44600 - Arabidopsis thaliana, EMBL:AAC27462
          Length = 305

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = +3

Query: 291 LHYCVSCAIHSKVVRNRSKKDRRIRTPPKSNFPRDMSRPQAVQRK 425
           L    S A+ + V  N+SKK      PP   FPR +S P   +RK
Sbjct: 26  LSLAASAAVSAAVEDNQSKKSNNNNHPPLLIFPRSVS-PYVTRRK 69


>At2g19110.1 68415.m02231 ATPase E1-E2 type family protein /
           haloacid dehalogenase-like hydrolase family protein /
           heavy-metal-associated domain-containing protein similar
           to cadmium efflux pump protein from Geobacillus
           stearothermophilus [GI:16753175], cadmium resistance
           protein B from Staphylococcus aureus [GI:14020985];
           T20K24.13 has been merged with T20K24.12 per suggestion
           of Dr. Kristian Axelsen (axe@biobase.dk)
          Length = 1172

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -3

Query: 622 ITKFHQIKHFFHCILVVVCPNSSMYLIMS 536
           I K H +KH+FH  LVV+       LI+S
Sbjct: 336 IMKVHNLKHWFHLALVVLVSGCPCGLILS 364


>At1g20130.1 68414.m02518 family II extracellular lipase, putative
           contains Pfam profile PF00657: GDSL-like
           Lipase/Acylhydrolase; similar to EXL3 (PMID:11431566)
          Length = 1006

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = -2

Query: 815 EXRKEXPQIPQNXPXPRGXGPDSLNARKNPPHTSPPEP 702
           E +   P  P+  P P    P +   +  PPH  PP+P
Sbjct: 84  EPKPAPPPAPKPVPCPSPPKPPAPTPKPVPPHGPPPKP 121


>At3g14440.1 68416.m01830 9-cis-epoxycarotenoid dioxygenase,
           putative / neoxanthin cleavage enzyme, putative /
           carotenoid cleavage dioxygenase, putative similar to
           9-cis-epoxycarotenoid dioxygenase GB:AAF26356
           [GI:6715257][Phaseolus vulgaris]
          Length = 599

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +3

Query: 291 LHYCVSCAIHSKVVRNRSKKDRRIRTPPKSNFPRDMSRPQAV 416
           L YC S  + S+V R  +     + TPP  +FP+  S   A+
Sbjct: 32  LSYCSSLPMASRVTRKLNVSSA-LHTPPALHFPKQSSNSPAI 72


>At1g70140.1 68414.m08071 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02181
          Length = 760

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -2

Query: 815 EXRKEXPQIPQNXPXPRGXGPDSLNARKNPPHTSPPEP 702
           E  +  PQ+ Q+ P P    P S+  +++ P  SPP P
Sbjct: 223 EDHQPPPQVKQSEPTP-PPPPPSIAVKQSAPTPSPPPP 259


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,685,098
Number of Sequences: 28952
Number of extensions: 318250
Number of successful extensions: 869
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 865
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1989897600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)