Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_E13
         (852 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     26   0.33 
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    22   5.4  
AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory recept...    21   9.4  

>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 26.2 bits (55), Expect = 0.33
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = -3

Query: 346 CRHRHMSKWYPNRYRLLCRCPYLSPSCRR 260
           CR+  + +WY    +    CPY +  C R
Sbjct: 57  CRYTFLLEWYHTLSKACYDCPYNTQDCYR 85


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -3

Query: 286 PYLSPSCRRHK-RPRPPKLARTNSTAS*PCKIYRLKDSEINKN 161
           PY S     H  + RPP+ +  +++ +  CK+Y   + + N N
Sbjct: 47  PYASSQHHHHHLQARPPQDSPYDASVAAACKLYS-SEGQQNSN 88


>AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory receptor
           candidate 50 protein.
          Length = 350

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 202 CKIYRLKDSEINKNLNKIIF 143
           C   +LK  EI  ++NK+IF
Sbjct: 288 CDKVQLKIGEIKYSVNKLIF 307


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,261
Number of Sequences: 336
Number of extensions: 3517
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23555563
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)