Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_E13
         (852 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M...   120   2e-28
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ...   107   2e-24
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p...   107   2e-24
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc...    95   1e-20
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce...    87   4e-18
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch...    52   1e-07
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom...    50   6e-07

>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 663

 Score =  120 bits (290), Expect = 2e-28
 Identities = 62/100 (62%), Positives = 73/100 (73%)
 Frame = +1

Query: 292 GTVIGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAFTQDGERLIGDAAKNQLTTN 471
           GTVIGIDLGTTYSCV V KNGRVEIIANDQGNRITPSYVAFT+D ERL+G+AAKNQ  +N
Sbjct: 35  GTVIGIDLGTTYSCVAVMKNGRVEIIANDQGNRITPSYVAFTED-ERLVGEAAKNQAPSN 93

Query: 472 PENTVF*CPSV*LVXNXXXQPVXHDVKFLPPSRSFEKNXP 591
           PENT+F    + +      + +  D+K  P     +KN P
Sbjct: 94  PENTIFDIKRL-IGRKFDEKTMAKDIKSFPFHIVNDKNRP 132


>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 644

 Score =  107 bits (257), Expect = 2e-24
 Identities = 51/63 (80%), Positives = 54/63 (85%)
 Frame = +1

Query: 301 IGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAFTQDGERLIGDAAKNQLTTNPEN 480
           IGIDLGTTYSCVG + N RVEIIANDQGNR TPSYVAFT D ERLIGDAAKNQ+  NP N
Sbjct: 5   IGIDLGTTYSCVGHFSNNRVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAMNPHN 63

Query: 481 TVF 489
           T+F
Sbjct: 64  TIF 66


>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 647

 Score =  107 bits (257), Expect = 2e-24
 Identities = 51/63 (80%), Positives = 54/63 (85%)
 Frame = +1

Query: 301 IGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAFTQDGERLIGDAAKNQLTTNPEN 480
           IGIDLGTTYSCVG + N RVEIIANDQGNR TPSYVAFT D ERLIGDAAKNQ+  NP N
Sbjct: 5   IGIDLGTTYSCVGHFSNNRVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAMNPHN 63

Query: 481 TVF 489
           T+F
Sbjct: 64  TIF 66


>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 613

 Score = 94.7 bits (225), Expect = 1e-20
 Identities = 45/63 (71%), Positives = 50/63 (79%)
 Frame = +1

Query: 301 IGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAFTQDGERLIGDAAKNQLTTNPEN 480
           IGIDLGTTYSCV V++   VEII NDQG R TPS+VAFT+  ERL+GDAAKNQ   NP N
Sbjct: 9   IGIDLGTTYSCVAVWETANVEIIPNDQGARTTPSFVAFTET-ERLVGDAAKNQAAMNPRN 67

Query: 481 TVF 489
           TVF
Sbjct: 68  TVF 70


>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 674

 Score = 86.6 bits (205), Expect = 4e-18
 Identities = 45/91 (49%), Positives = 59/91 (64%), Gaps = 1/91 (1%)
 Frame = +1

Query: 292 GTVIGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAFTQDGERLIGDAAKNQLTTN 471
           G VIGIDLGTT SC+ + +    ++IAN +G R TPS VAFT+DGERL+G +AK Q   N
Sbjct: 50  GPVIGIDLGTTTSCLAIMEGQTPKVIANAEGTRTTPSVVAFTKDGERLVGVSAKRQAVIN 109

Query: 472 PENTVF*CPSV*LVXNXXXQP-VXHDVKFLP 561
           PENT F   +  L+     +P V  D+K +P
Sbjct: 110 PENTFF--ATKRLIGRRFKEPEVQRDIKEVP 138


>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
           Pss1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 51.6 bits (118), Expect = 1e-07
 Identities = 24/63 (38%), Positives = 40/63 (63%)
 Frame = +1

Query: 298 VIGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAFTQDGERLIGDAAKNQLTTNPE 477
           V+GID G + + + V +N  +++I N+  NR TPS V++  +  R +G+AAK+   +N  
Sbjct: 7   VVGIDFGNSKTVIAVARNRAIDVIVNEVSNRSTPSLVSY-GERSRFLGEAAKSAEASNFR 65

Query: 478 NTV 486
           NTV
Sbjct: 66  NTV 68


>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 566

 Score = 49.6 bits (113), Expect = 6e-07
 Identities = 24/64 (37%), Positives = 39/64 (60%)
 Frame = +1

Query: 295 TVIGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAFTQDGERLIGDAAKNQLTTNP 474
           TVIGI  G   S +   ++G+ +++AN++GNR  PS +++  D E   G  A+ QL  N 
Sbjct: 25  TVIGISFGNQNSSIAFNRDGKTDVLANEEGNRQIPSILSYHGDQE-YHGVQARGQLVRNA 83

Query: 475 ENTV 486
           +N+V
Sbjct: 84  DNSV 87


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,945,974
Number of Sequences: 5004
Number of extensions: 53981
Number of successful extensions: 105
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)