Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP03_F_E12
(850 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0355 - 3122374-3122520,3122912-3123047,3123124-3123221,312... 146 3e-35
01_07_0031 - 40603243-40603491,40603617-40603799,40603896-406040... 38 0.013
12_02_0228 + 15903452-15903812,15904153-15904202,15904615-159047... 32 0.50
12_02_0134 - 14071190-14071435,14071800-14071988,14072114-140721... 31 1.2
06_03_0743 + 24069752-24070483,24071890-24072345 29 4.7
>08_01_0355 -
3122374-3122520,3122912-3123047,3123124-3123221,
3123724-3123801,3123876-3123945,3124452-3124516,
3124606-3124686,3124822-3124926,3125002-3125085,
3125175-3125250,3125358-3125436,3125526-3125646,
3125768-3125827
Length = 399
Score = 146 bits (353), Expect = 3e-35
Identities = 81/248 (32%), Positives = 140/248 (56%), Gaps = 8/248 (3%)
Frame = +1
Query: 79 MSALDQLKQHSTVVADTGDFEAMKEYKPTDATTNPSLILSAAGME--QYQHILDKAIKYG 252
++ LD + S +V DT F+ +++ PT AT + SL+L AG+ +++ +D A+ G
Sbjct: 63 VTELDAVASFSEIVPDTVVFDDFEKFAPTAATVSSSLLLGIAGLPDTKFKSAIDTALADG 122
Query: 253 KDNG-SSIEEQVAETLDMLSVLFGCEILKIIPGRVSVEVDARLSFDKDASIAKAIKFINL 429
+ N E++++ L G E+ ++PGRVS E+DARL++D I + + + L
Sbjct: 123 ECNTMEKPEDRMSCFLTKALANVGAEMAHLVPGRVSTEIDARLAYDTQGIIQRVHELLKL 182
Query: 430 FAEHGIKKERILIKLASTWEGIQAAKELEKKHGIHCNLTLLFSLYQAIACAEANVTLISP 609
+++H + ER+L K+ +TW+GI+A++ LE + GI +LT ++S QA A A+A +++
Sbjct: 183 YSDHDVLSERLLFKIPATWQGIEASRLLESE-GIQTHLTFVYSFAQAAAAAQAGASVVQI 241
Query: 610 FVGRILDWYVEHT-----KKTYEGKEXPGVVSVTKIYNYYKKFGYXTQVMGCHPFRNTGE 774
FVGR+ DW H+ + + E G+ K+Y Y K GY T++M RN +
Sbjct: 242 FVGRVRDWARTHSGDPEIDEALKKGEDAGLALAKKVYAYIHKNGYKTKLMAA-AIRNKQD 300
Query: 775 IRELXGCD 798
+ L G D
Sbjct: 301 VFSLLGID 308
>01_07_0031 -
40603243-40603491,40603617-40603799,40603896-40604084,
40604244-40604916,40605583-40605737
Length = 482
Score = 37.5 bits (83), Expect = 0.013
Identities = 36/123 (29%), Positives = 62/123 (50%), Gaps = 4/123 (3%)
Frame = +1
Query: 217 YQHILDKAIKYGKDNGSSIEEQVAETLDMLSVLFG--CEILKIIPGRVSVEVDARLSFDK 390
Y + I GKD S+ E V + + LF + G VSVEV RL+ D
Sbjct: 171 YDDQFKQLILAGKDAESAYWELVIKDIQDACKLFEPIYDQTDGADGYVSVEVSPRLANDT 230
Query: 391 DASIAKAIKFINLFAEHGIKKERILIKLASTWEGIQAAKELEKKHGIHCNLTLLFSL--Y 564
++ +A K+++ + + + IK+ +T E + + KE+ +GI N+TL+FS+ Y
Sbjct: 231 QGTV-EAAKWLHKVVD----RPNVYIKIPATAECVPSIKEVIA-NGISVNVTLIFSIARY 284
Query: 565 QAI 573
+A+
Sbjct: 285 EAV 287
>12_02_0228 + 15903452-15903812,15904153-15904202,15904615-15904713,
15907146-15907415,15908045-15908125,15909033-15909599,
15909677-15910053,15910326-15911613
Length = 1030
Score = 32.3 bits (70), Expect = 0.50
Identities = 41/159 (25%), Positives = 70/159 (44%), Gaps = 10/159 (6%)
Frame = -3
Query: 695 VTETTPGSSLPS*VFFVCSTYQSNIRPTNGDISVTF---ASAQAIAWYKENNSVRLQWIP 525
V+ GSS PS + F +T QS+ T+G + F +S+++ ++ + P
Sbjct: 724 VSSLAGGSSSPSSMIFAGATSQSSSITTSGSVPFQFSSQSSSESSLAGQDKSKAASSSAP 783
Query: 524 CFFSNSLAA*IP--SQVEANLIKILSFLIPCSANKLINLIAFAMLASLSNDNLAST---S 360
FS + P Q ++N + S L+ S ++ N + + S SN NL S+ +
Sbjct: 784 FSFSPQFGSTSPFAGQGKSNSVSSQSTLL--SGSQFSN--SLSAQTSTSNSNLLSSEKVN 839
Query: 359 TDTRPGIIFNISHPKST--LSISKVSATCSSMELPLSFP 249
+ P F S P S+ S++ S T S+ S P
Sbjct: 840 PGSSPSFAFGSSAPGSSPVFSLAVGSGTTSATPASASSP 878
>12_02_0134 - 14071190-14071435,14071800-14071988,14072114-14072194,
14072261-14072404,14072528-14072761,14072836-14073981,
14074863-14074922,14075178-14075420,14075509-14075607,
14076196-14076367,14076597-14076735,14077514-14077624,
14077695-14077797,14077885-14077962,14078054-14078122,
14078203-14078275,14078891-14078975,14079473-14079536,
14079963-14080073,14080139-14080213,14080306-14080398,
14080982-14081056,14081172-14081261
Length = 1259
Score = 31.1 bits (67), Expect = 1.2
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = -3
Query: 431 NKLINLIAFAMLASLSNDNLASTSTDTRPGIIFNISHP 318
N +++++AF +A S+ N+ STS G + +I+ P
Sbjct: 897 NSVVDILAFPFVAVQSSPNMPSTSASINSGFLLSIASP 934
>06_03_0743 + 24069752-24070483,24071890-24072345
Length = 395
Score = 29.1 bits (62), Expect = 4.7
Identities = 19/61 (31%), Positives = 28/61 (45%)
Frame = +3
Query: 423 QFIC*TWY*KRKNFN*IGLHLGRNSSSQRVGEEAWNPL*SYTVVLFVPSYCLC*SKCYTN 602
QF C Y +N + +H+ + S R G E+ T +L +P YC C + C N
Sbjct: 227 QFSCPVCYKTFNRYNNMQMHMWGHGSQYRKGPESLRGT-QPTAMLRLPCYC-CAAGCRNN 284
Query: 603 I 605
I
Sbjct: 285 I 285
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,185,285
Number of Sequences: 37544
Number of extensions: 457834
Number of successful extensions: 1089
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1052
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1087
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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