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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_E12
         (850 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3138| Best HMM Match : Transaldolase (HMM E-Value=0)               211   5e-55
SB_56029| Best HMM Match : SEA (HMM E-Value=4.7)                       30   2.1  
SB_54543| Best HMM Match : ResIII (HMM E-Value=1.9)                    30   2.7  
SB_50794| Best HMM Match : Cys_knot (HMM E-Value=2.2)                  30   2.7  
SB_36758| Best HMM Match : NACHT (HMM E-Value=0.00044)                 29   3.6  
SB_49926| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.3  
SB_19016| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.3  

>SB_3138| Best HMM Match : Transaldolase (HMM E-Value=0)
          Length = 224

 Score =  211 bits (516), Expect = 5e-55
 Identities = 104/150 (69%), Positives = 117/150 (78%), Gaps = 1/150 (0%)
 Frame = +1

Query: 376 LSFDKDASIAKAIKFINLFAEHGIKKERILIKLASTWEGIQAAKELEKKHGIHCNLTLLF 555
           LSFD +AS+AKA+KFI L+ E GI KER+LIKL+STWEGIQAA+ LE+ HGIHCNLTLLF
Sbjct: 2   LSFDVEASVAKALKFIELYKEAGISKERVLIKLSSTWEGIQAARILERDHGIHCNLTLLF 61

Query: 556 SLYQAIACAEANVTLISPFVGRILDWYVEHT-KKTYEGKEXPGVVSVTKIYNYYKKFGYX 732
           +  QA+ACAEA VTLISPFVGRI DWYV  T +K YE  E PGV SVT IYNYYKKFGY 
Sbjct: 62  AFVQAVACAEAGVTLISPFVGRIYDWYVAKTGQKEYEPHEDPGVKSVTAIYNYYKKFGYK 121

Query: 733 TQVMGCHPFRNTGEIRELXGCDC*PISPQI 822
           T VMG   FRN G+I  L GCD   ISP +
Sbjct: 122 TVVMGA-SFRNVGQITGLTGCDKLTISPSL 150


>SB_56029| Best HMM Match : SEA (HMM E-Value=4.7)
          Length = 111

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 15/29 (51%), Positives = 21/29 (72%)
 Frame = +1

Query: 319 GCEILKIIPGRVSVEVDARLSFDKDASIA 405
           GCE+L+  PG  SV VDA + FDK A+++
Sbjct: 50  GCEVLRFRPG--SVVVDAIVYFDKVANVS 76


>SB_54543| Best HMM Match : ResIII (HMM E-Value=1.9)
          Length = 521

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +2

Query: 497 KQPKSWRRSMESIVILHCCSLCTKLLPVL 583
           K  + WR S E I+I  CC + TK+L V+
Sbjct: 199 KPIEEWRLSWEVIIIDECCKVQTKVLRVI 227


>SB_50794| Best HMM Match : Cys_knot (HMM E-Value=2.2)
          Length = 396

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +2

Query: 497 KQPKSWRRSMESIVILHCCSLCTKLLPVL 583
           K  + WR S E I+I  CC + TK+L V+
Sbjct: 60  KPIEEWRLSWEVIIIDECCKVQTKVLRVI 88


>SB_36758| Best HMM Match : NACHT (HMM E-Value=0.00044)
          Length = 899

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
 Frame = +1

Query: 364 VDARLSFDKDASIAKAIKFINLFAEHGIKKERILIKLASTWEGIQAAKELEKKHGIHCNL 543
           +D  +  D   +I K    + L     +  + +LIKLA T E     +ELE K  I C+L
Sbjct: 597 IDGDVMCDVLDAINKNTSLMRLSLYTPVTSDELLIKLAETIEQRTLIEELELK--ISCSL 654

Query: 544 TLLFSLYQAIACAEAN-VTLISPFVGR 621
           T     Y A A +  N +  + P++ +
Sbjct: 655 THNAWSYFARALSTNNSIKALQPYINK 681


>SB_49926| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 429

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -3

Query: 488 SQVEANLIKILSFLIPCSANKLINLIAFAMLASLSNDN 375
           + V ANLI  + F +  S  +LINL  + ++A  S +N
Sbjct: 228 NNVAANLISSMRFYVMDSIGRLINLNGYRIVADNSGEN 265


>SB_19016| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 273

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -2

Query: 708 VVNFCHGNYSGXFLALISLLCMFNIPIQYTTNKW*Y*CNIC 586
           V+N+   N +   LA  S+   F+IP+Q    KW Y  N+C
Sbjct: 4   VMNYFLVNLAVCDLAFTSVCLPFDIPVQENGFKWPYHPNLC 44


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,279,382
Number of Sequences: 59808
Number of extensions: 553868
Number of successful extensions: 1254
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1252
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2407378809
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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