Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_E12
         (850 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g12230.1 68414.m01415 transaldolase, putative similar to Swis...   141   5e-34
At3g13210.1 68416.m01653 crooked neck protein, putative / cell c...    32   0.42 
At1g15060.1 68414.m01800 expressed protein                             30   2.2  
At3g25130.1 68416.m03138 expressed protein                             29   3.0  
At1g13290.1 68414.m01543 zinc finger (C2H2 type) family protein ...    29   3.0  
At1g76340.1 68414.m08869 integral membrane family protein contai...    29   3.9  
At1g73370.1 68414.m08492 sucrose synthase, putative / sucrose-UD...    29   3.9  
At4g35410.1 68417.m05029 clathrin adaptor complex small chain fa...    29   5.2  
At4g09680.1 68417.m01590 expressed protein                             29   5.2  
At2g10350.1 68415.m01087 Ulp1 protease family protein similar to...    29   5.2  
At1g51670.1 68414.m05821 expressed protein                             29   5.2  
At4g36380.1 68417.m05169 cytochrome P450 90C1 (CYP90C1) / rotund...    28   9.0  
At4g03970.1 68417.m00561 Ulp1 protease family protein contains P...    28   9.0  
At3g51120.1 68416.m05598 zinc finger (CCCH-type) family protein ...    28   9.0  
At2g15440.1 68415.m01766 expressed protein contains Pfam profile...    28   9.0  

>At1g12230.1 68414.m01415 transaldolase, putative similar to
           Swiss-Prot:P30148 transaldolase B (EC 2.2.1.2)
           [Escherichia coli O157:H7]
          Length = 405

 Score =  141 bits (342), Expect = 5e-34
 Identities = 80/245 (32%), Positives = 138/245 (56%), Gaps = 8/245 (3%)
 Frame = +1

Query: 88  LDQLKQHSTVVADTGDFEAMKEYKPTDATTNPSLILSAAGMEQ--YQHILDKAIKYGKDN 261
           L+ +   S +V DT  F+  + + PT AT + +L+L   G+    +++ +D A+      
Sbjct: 71  LNAVSAFSEIVPDTVVFDDFERFPPTAATVSSALLLGICGLPDTIFRNAVDMALADSSCA 130

Query: 262 G-SSIEEQVAETLDMLSVLFGCEILKIIPGRVSVEVDARLSFDKDASIAKAIKFINLFAE 438
           G  + E +++   +   V  G +++K++PGRVS EVDARL++D +  I K    + L+ E
Sbjct: 131 GLETTESRLSCFFNKAIVNVGGDLVKLVPGRVSTEVDARLAYDTNGIIRKVHDLLRLYNE 190

Query: 439 HGIKKERILIKLASTWEGIQAAKELEKKHGIHCNLTLLFSLYQAIACAEANVTLISPFVG 618
             +  +R+L K+ +TW+GI+AA+ LE + GI  ++T ++S  QA A ++A  ++I  FVG
Sbjct: 191 IDVPHDRLLFKIPATWQGIEAARLLESE-GIQTHMTFVYSFAQAAAASQAGASVIQIFVG 249

Query: 619 RILDWYVEHTKKT-----YEGKEXPGVVSVTKIYNYYKKFGYXTQVMGCHPFRNTGEIRE 783
           R+ DW   H+  T      +  E PG+  V + YNY  K+GY +++M     RN  ++  
Sbjct: 250 RLRDWARNHSGDTEIESAIKSGEDPGLALVKRSYNYIHKYGYKSKLMAA-AVRNKQDLFS 308

Query: 784 LXGCD 798
           L G D
Sbjct: 309 LLGVD 313


>At3g13210.1 68416.m01653 crooked neck protein, putative / cell
           cycle protein, putative similar to Swiss-Prot:P17886
           crooked neck protein [Drosophila melanogaster]
          Length = 657

 Score = 32.3 bits (70), Expect = 0.42
 Identities = 31/139 (22%), Positives = 61/139 (43%), Gaps = 5/139 (3%)
 Frame = +1

Query: 88  LDQLKQHSTVVADTGDFEAMKEYKPTDATTNPSLILSAAGMEQYQHILDKAIKYGKDNGS 267
           LD+ K H  V  D   FEA       D     ++     G+++ + I D+A  Y KD+  
Sbjct: 510 LDRTK-HCKVWVDFAKFEASAAEHKEDEEEEDAIERKKDGIKRAREIFDRANTYNKDSTP 568

Query: 268 SIEEQVAETL-DMLSVLFGCEIL---KIIPGRVSVEVDARLSFDKDASIAKAIKFIN-LF 432
            ++E+ A  L D L++  G   L   +++  ++  +V  R    ++    +  ++ + LF
Sbjct: 569 ELKEERAMLLEDWLNMETGFGKLGDVRVVQSKLPKKVKKRKLSSREDGCTEYEEYTDYLF 628

Query: 433 AEHGIKKERILIKLASTWE 489
            E        +++ A  W+
Sbjct: 629 PEESETTSLKILEAAHKWK 647


>At1g15060.1 68414.m01800 expressed protein
          Length = 578

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 6/91 (6%)
 Frame = +1

Query: 46  YER*TDTKRTKMSALDQLKQHSTVVADTGDF--EAMKEYKPTDATTNPSLI----LSAAG 207
           YER  D  R+K+ +L + KQ+S +V    D     +  +     + +P LI       A 
Sbjct: 255 YERFNDI-RSKLLSLIESKQNSGLVNQVRDLAQRLVNLFDDGQRSVSPPLIDLQERLTAT 313

Query: 208 MEQYQHILDKAIKYGKDNGSSIEEQVAETLD 300
           +E +Q  LD  +KY  D    +EE V   ++
Sbjct: 314 IEDFQKQLDLIVKYDWDFDHYLEEDVPAAIE 344


>At3g25130.1 68416.m03138 expressed protein 
          Length = 406

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -3

Query: 470 LIKILSFLIPCSANKLINLIAFAMLASLSNDNLASTSTDTRPGIIFN 330
           + KILSFL P      + L+A      + +  L S S +T+P  +F+
Sbjct: 52  IFKILSFLSPLFVTTTLLLLALLSTLHVQDTCLDSESLETQPSFLFS 98


>At1g13290.1 68414.m01543 zinc finger (C2H2 type) family protein
           contains Pfam domian PF00096: Zinc finger, C2H2 type
          Length = 302

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 19/61 (31%), Positives = 27/61 (44%)
 Frame = +3

Query: 423 QFIC*TWY*KRKNFN*IGLHLGRNSSSQRVGEEAWNPL*SYTVVLFVPSYCLC*SKCYTN 602
           QF C         FN + +H+  + S  R G E+     S + +L +P YC C   C  N
Sbjct: 100 QFSCSVCNKTFNRFNNMQMHMWGHGSQYRKGPESLRGTKSSSSILRLPCYC-CAEGCKNN 158

Query: 603 I 605
           I
Sbjct: 159 I 159


>At1g76340.1 68414.m08869 integral membrane family protein contains
           Pfam profile  PF00892: Integral membrane protein;
           similar to GDP-mannose transporter (SP:Q941R4)
           [Arabidopsis thaliana] and to LPG2 protein (GI:9998817)
           [Leishmania mexicana]
          Length = 372

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = -2

Query: 738 LGLVTKLLVIVVNFCHGNYSGXFLALISLL-CMF-NIPIQYTTNK 610
           LG+V KLL +V+N    +    F+  + LL CMF  +  Q +T K
Sbjct: 284 LGIVNKLLTVVINLMVWDKHSTFVGTLGLLVCMFGGVMYQQSTIK 328


>At1g73370.1 68414.m08492 sucrose synthase, putative / sucrose-UDP
            glucosyltransferase, putative similar to sucrose synthase
            GI:6682841 from [Citrus unshiu]
          Length = 942

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 23/93 (24%), Positives = 41/93 (44%)
 Frame = +1

Query: 58   TDTKRTKMSALDQLKQHSTVVADTGDFEAMKEYKPTDATTNPSLILSAAGMEQYQHILDK 237
            T+T++TK  + D  +QH   V   G+ E  +     DA+     +L ++  E+ Q +   
Sbjct: 843  TETEKTKQKSKDGQEQHDVKV---GEREVREGLLAADASERVKKVLESS--EEKQKLEKM 897

Query: 238  AIKYGKDNGSSIEEQVAETLDMLSVLFGCEILK 336
             I YG+ +             ++  L+ C ILK
Sbjct: 898  KIAYGQQHSQGASPVRNLFWSVVVCLYICYILK 930


>At4g35410.1 68417.m05029 clathrin adaptor complex small chain
           family protein contains Pfam profile: PF01217 clathrin
           adaptor complex small chain
          Length = 124

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +1

Query: 511 LEKKHGIHCNLTLLFSLYQAIACAEANVTLISPFV 615
           L++  G  C L L+F+ ++ IAC + + TL  PFV
Sbjct: 91  LDRYFGSVCELDLIFNFHKVIACCKHSRTL--PFV 123


>At4g09680.1 68417.m01590 expressed protein
          Length = 1075

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 26/99 (26%), Positives = 41/99 (41%), Gaps = 1/99 (1%)
 Frame = +1

Query: 256 DNGSSIEEQVAETLDMLSVLFGCEILKIIPGRVSVEVDAR-LSFDKDASIAKAIKFINLF 432
           D  SSI+    + L   +    CE    +P   SV ++A  L +D   ++ +       F
Sbjct: 445 DRTSSIDVLTPDLLSDRNASRICEGHPGMPDCTSVFIEALVLPWDLICTVTEEEAAAPNF 504

Query: 433 AEHGIKKERILIKLASTWEGIQAAKELEKKHGIHCNLTL 549
            EH   +E    K   T  G+Q+   L   H I C +T+
Sbjct: 505 EEHDTSQEIRPHKRCKTNNGLQSQSFLSVPHEISCQMTI 543


>At2g10350.1 68415.m01087 Ulp1 protease family protein similar to
           At5g28170, At1g35110, At1g44880, At3g42530, At4g19320,
           At5g36020, At4g03970, At3g43010 ; contains Pfam profile
           PF02902: Ulp1 protease family, C-terminal catalytic
           domain
          Length = 1110

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 17/53 (32%), Positives = 29/53 (54%)
 Frame = -3

Query: 416 LIAFAMLASLSNDNLASTSTDTRPGIIFNISHPKSTLSISKVSATCSSMELPL 258
           LIAF  +  L  D L   ST     +   ++HPK  +S+ ++ A  S+++LP+
Sbjct: 252 LIAFRNIPGLL-DLLLDDSTSKTILLWKRLTHPKQVISLHQIHALESNLKLPM 303


>At1g51670.1 68414.m05821 expressed protein
          Length = 178

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +2

Query: 434 LNMVLKKKEF*L--NWPPLGKEFKQPKSWRRSMESI 535
           LN  LKK       +WPPLG E K P S+  ++ S+
Sbjct: 85  LNFALKKGGIPRAEDWPPLGSESKTPSSYEPALVSM 120


>At4g36380.1 68417.m05169 cytochrome P450 90C1 (CYP90C1) /
           rotundifolia3 (ROT3) identical  to Cytochrome P450 90C1
           (ROTUNDIFOLIA3) (SP:Q9M066) [Arabidopsis thaliana];
          Length = 524

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 16/63 (25%), Positives = 32/63 (50%)
 Frame = +1

Query: 115 VVADTGDFEAMKEYKPTDATTNPSLILSAAGMEQYQHILDKAIKYGKDNGSSIEEQVAET 294
           ++ D GD E  K+ +P+D  +   + +   G E     +  A+K+  DN  ++ + V E 
Sbjct: 295 LLRDGGDSE--KQSQPSDFVSGKIVEMMIPGEETMPTAMTLAVKFLSDNPVALAKLVEEN 352

Query: 295 LDM 303
           ++M
Sbjct: 353 MEM 355


>At4g03970.1 68417.m00561 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain; similar to  At5g28170, At1g35110,
           At1g44880, At3g42530, At4g19320, At5g36020, At3g43010,
           At2g10350
          Length = 1043

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 16/55 (29%), Positives = 30/55 (54%)
 Frame = -3

Query: 422 INLIAFAMLASLSNDNLASTSTDTRPGIIFNISHPKSTLSISKVSATCSSMELPL 258
           + LIAF  +  L  D +   ST     +   ++HPK  +S+ ++ A  S+++LP+
Sbjct: 211 LQLIAFRNIPGLL-DLVLDDSTSKTILLWKRLTHPKQVISLPQIHALESNLKLPV 264


>At3g51120.1 68416.m05598 zinc finger (CCCH-type) family protein
            contains Pfam domain, PF00642: Zinc finger
            C-x8-C-x5-C-x3-H type (and similar)
          Length = 1230

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
 Frame = +1

Query: 103  QHSTVVADTGDFEAMKEYKPTDATTNPSLILS----AAGMEQYQHILDKAIKYGKDNGSS 270
            Q++TV AD G+    K  +  D T   S+ ++    A  + Q  H LD      K +   
Sbjct: 823  QYNTVRAD-GNHNTTKTLE--DETNGGSVSINGSVHAPNLNQESHFLDFPSPTPKSSPED 879

Query: 271  IEEQVAETLDMLS 309
            +E Q AET+  LS
Sbjct: 880  LEAQAAETIQSLS 892


>At2g15440.1 68415.m01766 expressed protein contains Pfam profile
           PF04669: Protein of unknown function (DUF579)
          Length = 329

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 21/81 (25%), Positives = 33/81 (40%)
 Frame = +1

Query: 523 HGIHCNLTLLFSLYQAIACAEANVTLISPFVGRILDWYVEHTKKTYEGKEXPGVVSVTKI 702
           HG  CNL +    ++++     N    + FV     + V   +++  G E   VV  TK+
Sbjct: 110 HGPACNLLIFGLTHESLLWRSINFQGRTVFVDES-PYSVSKFEQSNPGVEAYEVVYSTKV 168

Query: 703 YNYYKKFGYXTQVMGCHPFRN 765
               K  GY      C P +N
Sbjct: 169 SQAKKLLGYYKTRPECRPVQN 189


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,599,557
Number of Sequences: 28952
Number of extensions: 397303
Number of successful extensions: 1062
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1023
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1059
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1970388800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)