Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP03_F_E07
(827 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein S3a|... 162 5e-41
SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein S3a|S... 160 3e-40
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy... 29 1.1
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ... 29 1.1
SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase Ssp2|Schiz... 29 1.1
SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces pomb... 27 4.3
SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|c... 27 4.3
SPAC4A8.02c |||conserved protein|Schizosaccharomyces pombe|chr 1... 26 5.7
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo... 26 7.5
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe... 25 9.9
SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr 1|... 25 9.9
SPAC664.08c |||traub transciption factor family protein |Schizos... 25 9.9
>SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein
S3a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 252
Score = 162 bits (394), Expect = 5e-41
Identities = 83/176 (47%), Positives = 121/176 (68%)
Frame = +1
Query: 235 KIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRW 414
K A++ LKGR+ EVSLADLQ D E +FRK +L E +QG++ L +F+G+ +T+DKLR
Sbjct: 55 KNANDSLKGRILEVSLADLQKDE--EHAFRKVKLRVEDIQGKSCLTSFNGLSITSDKLRS 112
Query: 415 MVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEII 594
+V+KWQT IEA+ +KTTDGY+ RVF IGFT + + +KT YAQ +Q+RAIR+KM ++I
Sbjct: 113 LVRKWQTTIEADQTIKTTDGYLCRVFVIGFTRRRANQVKKTTYAQSSQIRAIRQKMFQVI 172
Query: 595 TRDVTNSELREVVNKLIPDSIAKDIEKACHGI*PSARCLHPKXESVEXAPLSEISK 762
++ +RE+V KLIP+ I ++IE+A I P L K + ++ AP + K
Sbjct: 173 QNQTSSCSMRELVQKLIPEVIGREIERATGSIFPLQNVLVRKVKILK-APKHDAQK 227
Score = 35.5 bits (78), Expect = 0.009
Identities = 11/20 (55%), Positives = 17/20 (85%)
Frame = +2
Query: 128 IVDPFTRKDWYDVKASVYVQ 187
+VDPF+RK+WYD+KA + +
Sbjct: 20 VVDPFSRKEWYDIKAPAFFE 39
Score = 31.5 bits (68), Expect = 0.15
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +3
Query: 168 RPPSMFSKRQVGTTLVNRTQGNENCFGRIEGK 263
+ P+ F + VG TLVNRT G +N ++G+
Sbjct: 33 KAPAFFEVKNVGKTLVNRTAGLKNANDSLKGR 64
>SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein
S3a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 252
Score = 160 bits (388), Expect = 3e-40
Identities = 78/154 (50%), Positives = 109/154 (70%)
Frame = +1
Query: 235 KIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRW 414
K A++ LKGR+ EVSLADLQ D E SFRK +L E +QG++ L +F+G D+T+DKLR
Sbjct: 55 KNANDSLKGRILEVSLADLQKDE--EHSFRKVKLRVEDIQGKSCLTSFNGFDMTSDKLRS 112
Query: 415 MVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEII 594
+V+KWQ+ IEAN +KTTDGY+ R+F IGFT++ +KT YAQ +Q+RAI +KM ++I
Sbjct: 113 LVRKWQSTIEANQTIKTTDGYLCRIFVIGFTSRRVNQVKKTTYAQSSQIRAIHQKMFQVI 172
Query: 595 TRDVTNSELREVVNKLIPDSIAKDIEKACHGI*P 696
++E+V KLIP+ I + IEKA + I P
Sbjct: 173 QNQANGCSMKELVQKLIPEVIGRAIEKATNNIYP 206
Score = 37.1 bits (82), Expect = 0.003
Identities = 12/20 (60%), Positives = 17/20 (85%)
Frame = +2
Query: 128 IVDPFTRKDWYDVKASVYVQ 187
+VDPF+RKDWYD+KA + +
Sbjct: 20 VVDPFSRKDWYDIKAPAFFE 39
Score = 31.5 bits (68), Expect = 0.15
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +3
Query: 168 RPPSMFSKRQVGTTLVNRTQGNENCFGRIEGK 263
+ P+ F + VG TLVNRT G +N ++G+
Sbjct: 33 KAPAFFEVKNVGKTLVNRTAGLKNANDSLKGR 64
>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1019
Score = 28.7 bits (61), Expect = 1.1
Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 1/102 (0%)
Frame = +1
Query: 232 TKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLR 411
TK+A KG +V++ L+ DAE + + F I EY++ N D T K
Sbjct: 91 TKLAET--KGAAADVNI--LKRTKDAEENKKLFEKIIEYIRATNKKVGVFPKDKTQGK-- 144
Query: 412 WMVKKWQTLIE-ANIDVKTTDGYVLRVFCIGFTNKDSLSQRK 534
+ +W ++ E + D + C+ ++ L+ K
Sbjct: 145 -FINEWDSIFEPVKSEFNLVDASLGLAKCLAIKDEQELANIK 185
>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 308
Score = 28.7 bits (61), Expect = 1.1
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Frame = +1
Query: 265 VFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMV--KKWQTL 438
VF+V + + D R+ + +A Q R V C H MDL + LR +V ++ L
Sbjct: 86 VFDVESREFERDLVTFRNCLE-ATVANSPQAR-VFCLIHKMDLVQEDLRDLVFEERKAIL 143
Query: 439 IEANIDVKTT 468
+E + D++TT
Sbjct: 144 LETSKDLETT 153
>SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase
Ssp2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 576
Score = 28.7 bits (61), Expect = 1.1
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +3
Query: 138 HSLAKIGTMSRPPSMFSKRQVGTTLVNRTQGNENCFGRIE 257
+S + G PP SKR +G ++ T G E FG+++
Sbjct: 11 NSTMRNGARVLPPEAISKRHIGPYIIRETLG-EGSFGKVK 49
>SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 26.6 bits (56), Expect = 4.3
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 432 LPFFNHPPELIGCEVHAVEVAEHITS 355
L H PEL+ C +VA+H+TS
Sbjct: 181 LQSMGHSPELVQCITCLPDVADHLTS 206
>SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 438
Score = 26.6 bits (56), Expect = 4.3
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = -1
Query: 326 LRKDLSASVSACRSARETSKTLPFNPSEAIFVXLGTVDKRGADLPL 189
+ KD S + +A SA E +P +FV GTV +DLP+
Sbjct: 332 VNKD-SENQNAGESADEKMSVVPLKKYSHVFVYDGTVHANQSDLPI 376
>SPAC4A8.02c |||conserved protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 142
Score = 26.2 bits (55), Expect = 5.7
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = -1
Query: 200 DLPLAEHRRRP*HRTNLCE*MGRQSS 123
D+ LAE RR+P RT +C +G +S+
Sbjct: 117 DIQLAEFRRQPHSRTIVCTIIGLRSN 142
>SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1309
Score = 25.8 bits (54), Expect = 7.5
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = +3
Query: 492 LHWFHQ*GLLEPTQDVLRPAHSGQ--SNQKENV 584
LHW+ L+ +Q + P H+GQ S + NV
Sbjct: 1162 LHWYSLMSLMGTSQGICIPRHAGQVLSTPRRNV 1194
>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 882
Score = 25.4 bits (53), Expect = 9.9
Identities = 12/46 (26%), Positives = 21/46 (45%)
Frame = +1
Query: 409 RWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYA 546
++ W L+ T GYV+R GFT+ ++ + K +A
Sbjct: 795 KFATSNWDKLLSRLPVAGTMRGYVVRFVTSGFTHASAIDKIKEFFA 840
>SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 623
Score = 25.4 bits (53), Expect = 9.9
Identities = 11/43 (25%), Positives = 25/43 (58%)
Frame = +1
Query: 499 GFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELRE 627
G T +DS+ ++ A H + R +++K E ++ D +N +++
Sbjct: 7 GITQEDSIEKKSKNVASHGEKRKVKRKK-EDLSMDGSNDGVKD 48
>SPAC664.08c |||traub transciption factor family protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 452
Score = 25.4 bits (53), Expect = 9.9
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +1
Query: 388 DLTTD-KLRWMVKKWQTLIEANIDVKTTDGYVLR 486
D T D +RWM K Q + N+D K + G +R
Sbjct: 351 DSTRDGTVRWMATKKQKQKKENVDTKASKGRKIR 384
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,327,386
Number of Sequences: 5004
Number of extensions: 68343
Number of successful extensions: 193
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -