Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP03_F_E07
(827 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0043 + 5242496-5242554,5242673-5242778,5243586-5243723,524... 197 8e-51
12_02_0012 - 12309332-12310228,12311087-12311669,12311945-123120... 195 4e-50
02_02_0482 - 10819562-10819813,10820773-10820952,10822073-108221... 194 7e-50
01_01_0891 + 7023383-7023700,7024627-7024705,7024888-7024951,702... 31 1.1
06_03_0290 - 19193707-19193752,19193822-19194090 28 7.9
02_04_0050 - 19245087-19245113,19245306-19245449,19245546-192456... 28 7.9
>03_02_0043 +
5242496-5242554,5242673-5242778,5243586-5243723,
5243794-5243979,5244075-5244275,5244362-5244460
Length = 262
Score = 197 bits (481), Expect = 8e-51
Identities = 101/177 (57%), Positives = 130/177 (73%)
Frame = +1
Query: 232 TKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLR 411
TKIASEGLK RVFEVSLADLQ D D +++RK RL AE VQG+NVL NF GM TTDKLR
Sbjct: 54 TKIASEGLKHRVFEVSLADLQNDED--QAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLR 111
Query: 412 WMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEI 591
+VKKWQTLIEA++DVKTTDGY+LR+FCIGFT + ++TCYAQ +Q+R IR+KM EI
Sbjct: 112 SLVKKWQTLIEAHVDVKTTDGYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEI 171
Query: 592 ITRDVTNSELREVVNKLIPDSIAKDIEKACHGI*PSARCLHPKXESVEXAPLSEISK 762
+ ++ +L+E+V+K IP+ I K+IEKA I P K + ++ AP ++ K
Sbjct: 172 MANQASSCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVFVRKVKILK-APKFDLGK 227
Score = 33.1 bits (72), Expect = 0.28
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = +2
Query: 131 VDPFTRKDWYDVKA 172
VDPF +KDWYD+KA
Sbjct: 21 VDPFAKKDWYDIKA 34
Score = 31.1 bits (67), Expect = 1.1
Identities = 12/23 (52%), Positives = 18/23 (78%)
Frame = +3
Query: 168 RPPSMFSKRQVGTTLVNRTQGNE 236
+ PS+F+ R +G TLV+RTQG +
Sbjct: 33 KAPSVFNVRNIGKTLVSRTQGTK 55
>12_02_0012 -
12309332-12310228,12311087-12311669,12311945-12312051,
12313190-12313237,12315139-12315216,12315300-12315500,
12315612-12315797,12315870-12316007,12318311-12318416,
12318529-12318587
Length = 800
Score = 195 bits (475), Expect = 4e-50
Identities = 100/177 (56%), Positives = 129/177 (72%)
Frame = +1
Query: 232 TKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLR 411
TKIASEGLK RVFEVSLADLQ D D +++RK RL AE VQG+NVL NF GM TTDKLR
Sbjct: 54 TKIASEGLKHRVFEVSLADLQNDED--QAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLR 111
Query: 412 WMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEI 591
+VKKWQTLIEA++DVKTTD Y+LR+FCIGFT + ++TCYAQ +Q+R IR+KM EI
Sbjct: 112 SLVKKWQTLIEAHVDVKTTDNYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEI 171
Query: 592 ITRDVTNSELREVVNKLIPDSIAKDIEKACHGI*PSARCLHPKXESVEXAPLSEISK 762
+ ++ +L+E+V+K IP+ I K+IEKA I P K + ++ AP ++ K
Sbjct: 172 MVNQASSCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVFVRKVKILK-APKFDLGK 227
Score = 33.1 bits (72), Expect = 0.28
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = +2
Query: 131 VDPFTRKDWYDVKA 172
VDPF +KDWYD+KA
Sbjct: 21 VDPFAKKDWYDIKA 34
Score = 31.5 bits (68), Expect = 0.85
Identities = 13/23 (56%), Positives = 18/23 (78%)
Frame = +3
Query: 168 RPPSMFSKRQVGTTLVNRTQGNE 236
+ PS+F+ R VG TLV+RTQG +
Sbjct: 33 KAPSVFNVRNVGKTLVSRTQGTK 55
>02_02_0482 -
10819562-10819813,10820773-10820952,10822073-10822150,
10823056-10823256,10823365-10823550,10823646-10823783,
10824396-10824501,10824634-10824692
Length = 399
Score = 194 bits (473), Expect = 7e-50
Identities = 100/177 (56%), Positives = 128/177 (72%)
Frame = +1
Query: 232 TKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLR 411
TKIASEGLK RVFEVSLADLQ D D +++RK RL AE VQGRNVL NF GM TTDKLR
Sbjct: 54 TKIASEGLKHRVFEVSLADLQNDED--QAYRKVRLRAEDVQGRNVLTNFWGMSFTTDKLR 111
Query: 412 WMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEI 591
+VKKWQTLIEA++DVKTTD Y+LR+FCIGFT + ++TCYAQ +Q+R IR+KM EI
Sbjct: 112 SLVKKWQTLIEAHVDVKTTDNYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEI 171
Query: 592 ITRDVTNSELREVVNKLIPDSIAKDIEKACHGI*PSARCLHPKXESVEXAPLSEISK 762
+ + +L+E+V+K IP+ I K+IEK+ I P K + ++ AP ++ K
Sbjct: 172 MANQASTCDLKELVSKFIPEVIGKEIEKSTSSIFPLQNVFIRKVKILK-APKFDLGK 227
Score = 33.5 bits (73), Expect = 0.21
Identities = 11/14 (78%), Positives = 14/14 (100%)
Frame = +2
Query: 131 VDPFTRKDWYDVKA 172
VDPF++KDWYD+KA
Sbjct: 21 VDPFSKKDWYDIKA 34
Score = 31.1 bits (67), Expect = 1.1
Identities = 12/23 (52%), Positives = 18/23 (78%)
Frame = +3
Query: 168 RPPSMFSKRQVGTTLVNRTQGNE 236
+ P++FS R +G TLV+RTQG +
Sbjct: 33 KAPTVFSVRNIGKTLVSRTQGTK 55
>01_01_0891 +
7023383-7023700,7024627-7024705,7024888-7024951,
7025324-7025401,7025513-7025708,7025895-7025963,
7026115-7026254,7026425-7026547,7027390-7027582,
7028872-7029034,7029433-7029476,7029683-7029724
Length = 502
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/64 (29%), Positives = 28/64 (43%)
Frame = +1
Query: 94 VEGR*KRC*EEDCRPIHSQRLVRCQGLRLCSARGKSAPRLSTVPRXTKIASEGLKGRVFE 273
V GR +R E RP H L+RC+ + + G S P T A KG +++
Sbjct: 11 VHGRLRRSPELHARPYHRPSLLRCRAFKQEADNGGEEASSSPPPPTTAEARRRRKGPLYK 70
Query: 274 VSLA 285
+ A
Sbjct: 71 LKAA 74
>06_03_0290 - 19193707-19193752,19193822-19194090
Length = 104
Score = 28.3 bits (60), Expect = 7.9
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 368 SATSTAWTSQPISSGGWLKNGRLSSKPTLM 457
+A S A T P S GW+ G S+ P+L+
Sbjct: 67 AAGSAARTRSPSQSNGWITGGSASAMPSLV 96
>02_04_0050 -
19245087-19245113,19245306-19245449,19245546-19245637,
19245733-19245811,19245902-19245968,19246084-19246175,
19246267-19246383,19246472-19246583,19246884-19246990,
19247113-19247189,19247351-19247432,19247526-19247663,
19248176-19248234,19249155-19249233
Length = 423
Score = 28.3 bits (60), Expect = 7.9
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = -2
Query: 184 NIDGGLDIVPIFASEWVDNLLLNTFFTALRQAFIFPDRHVQ 62
++D GLD++ + + V LLL+T +T + PD Q
Sbjct: 166 DVDCGLDVIRRYRYQLVVALLLSTMYTVILNGVYVPDWEYQ 206
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,023,400
Number of Sequences: 37544
Number of extensions: 497168
Number of successful extensions: 1268
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1262
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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