Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_E07
         (827 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37698| Best HMM Match : Ribosomal_S3Ae (HMM E-Value=5e-21)         131   8e-31
SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_37029| Best HMM Match : 7tm_1 (HMM E-Value=4.2039e-45)              29   4.6  
SB_45038| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.1  
SB_33149| Best HMM Match : DSL (HMM E-Value=5.60519e-45)               28   8.0  

>SB_37698| Best HMM Match : Ribosomal_S3Ae (HMM E-Value=5e-21)
          Length = 147

 Score =  131 bits (316), Expect = 8e-31
 Identities = 64/110 (58%), Positives = 82/110 (74%)
 Frame = +1

Query: 433 TLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTN 612
           TLIEA +DVKTTDGY+LR+FCIGFT +     +KT YA+HTQ++AIRKKM +IITR+V+ 
Sbjct: 2   TLIEAAVDVKTTDGYLLRMFCIGFTKRRQNQIKKTAYAKHTQIKAIRKKMVDIITREVST 61

Query: 613 SELREVVNKLIPDSIAKDIEKACHGI*PSARCLHPKXESVEXAPLSEISK 762
           ++L+EVVNKLIPDSI KDIEK+C  I P    +H +   V   P  +I K
Sbjct: 62  NDLKEVVNKLIPDSIGKDIEKSCQSIYP-LHDVHIRKVKVLKKPKFDIGK 110


>SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1974

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 11/30 (36%), Positives = 21/30 (70%)
 Frame = +1

Query: 265  VFEVSLADLQADTDAERSFRKFRLIAEYVQ 354
            +F  + +D+QA+++    FR+F L+ EYV+
Sbjct: 1176 IFNNTFSDVQANSNQIWKFRRFELVMEYVE 1205


>SB_37029| Best HMM Match : 7tm_1 (HMM E-Value=4.2039e-45)
          Length = 1102

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 15/57 (26%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
 Frame = -1

Query: 452  MLASMRVCHFLTIHLSLSVVRSMPWKLQSTLRPCTYSAINLNLRKDLSA--SVSACR 288
            ++ SM +C ++ + +SL   R +   +  +L PC Y  ++++L + +    S+S CR
Sbjct: 948  VVMSMSLCRYVHVVMSLCPCRYVHVVMSMSLCPCRYVVMSMSLCRYIHVVMSMSLCR 1004


>SB_45038| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 561

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -1

Query: 326 LRKDLSASVSACRSARETSKTLPFNPSEAIFV 231
           LRK L    S  +  RE  + L FNP E+ +V
Sbjct: 302 LRKQLIDMASVAKDLREIDELLKFNPDESAYV 333


>SB_33149| Best HMM Match : DSL (HMM E-Value=5.60519e-45)
          Length = 443

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
 Frame = +2

Query: 134 DPFTRKDWYDVKASVYV--QQEASRHHACQPYPGXRKLL 244
           +P   +DWY  K +VY   + +   H++C    G R  L
Sbjct: 338 NPVCERDWYGTKCTVYCRPRDDEEGHYSCGAVDGRRVCL 376


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,890,894
Number of Sequences: 59808
Number of extensions: 546335
Number of successful extensions: 1372
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1368
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2323539746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)