Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP03_F_E07
(827 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF034971-1|AAC62117.1| 268|Drosophila melanogaster ribosomal pr... 233 2e-61
AE014135-4|AAF59372.1| 268|Drosophila melanogaster CG2168-PA, i... 233 2e-61
AE014135-5|AAN06541.1| 218|Drosophila melanogaster CG2168-PB, i... 225 8e-59
Y10115-1|CAA71201.1| 270|Drosophila melanogaster ribosomal prot... 218 9e-57
AY070949-1|AAL48571.1| 217|Drosophila melanogaster RE04220p pro... 204 9e-53
AE014135-6|AAN06542.1| 163|Drosophila melanogaster CG2168-PD, i... 151 1e-36
AE014298-2816|AAF48933.1| 1513|Drosophila melanogaster CG12359-P... 29 5.9
>AF034971-1|AAC62117.1| 268|Drosophila melanogaster ribosomal
protein S3a protein.
Length = 268
Score = 233 bits (571), Expect = 2e-61
Identities = 113/154 (73%), Positives = 129/154 (83%)
Frame = +1
Query: 235 KIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRW 414
+IAS+ LKGRVFEVSLADLQ D D ERSFRKFRLIAE VQ RNVLCNFHGMDLTTDK R
Sbjct: 56 RIASDYLKGRVFEVSLADLQKDIDPERSFRKFRLIAEDVQDRNVLCNFHGMDLTTDKYRS 115
Query: 415 MVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEII 594
MVKKWQTLIEA ++ KT DGY+LRVFCIGFT KD SQRKTCYAQ +QVR IR +M +II
Sbjct: 116 MVKKWQTLIEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKTCYAQQSQVRKIRARMTDII 175
Query: 595 TRDVTNSELREVVNKLIPDSIAKDIEKACHGI*P 696
T +V+ ++L+++VNKL DSIAKDIEK+C I P
Sbjct: 176 TNEVSGADLKQLVNKLALDSIAKDIEKSCQRIYP 209
Score = 37.9 bits (84), Expect = 0.017
Identities = 16/34 (47%), Positives = 22/34 (64%)
Frame = +3
Query: 168 RPPSMFSKRQVGTTLVNRTQGNENCFGRIEGKSF 269
+ P+MF RQ+G TLVNRTQG ++G+ F
Sbjct: 34 KAPNMFQTRQIGKTLVNRTQGQRIASDYLKGRVF 67
Score = 36.3 bits (80), Expect = 0.051
Identities = 13/15 (86%), Positives = 15/15 (100%)
Frame = +2
Query: 128 IVDPFTRKDWYDVKA 172
+VDPF+RKDWYDVKA
Sbjct: 21 VVDPFSRKDWYDVKA 35
>AE014135-4|AAF59372.1| 268|Drosophila melanogaster CG2168-PA,
isoform A protein.
Length = 268
Score = 233 bits (571), Expect = 2e-61
Identities = 113/154 (73%), Positives = 129/154 (83%)
Frame = +1
Query: 235 KIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRW 414
+IAS+ LKGRVFEVSLADLQ D D ERSFRKFRLIAE VQ RNVLCNFHGMDLTTDK R
Sbjct: 56 RIASDYLKGRVFEVSLADLQKDIDPERSFRKFRLIAEDVQDRNVLCNFHGMDLTTDKYRS 115
Query: 415 MVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEII 594
MVKKWQTLIEA ++ KT DGY+LRVFCIGFT KD SQRKTCYAQ +QVR IR +M +II
Sbjct: 116 MVKKWQTLIEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKTCYAQQSQVRKIRARMTDII 175
Query: 595 TRDVTNSELREVVNKLIPDSIAKDIEKACHGI*P 696
T +V+ ++L+++VNKL DSIAKDIEK+C I P
Sbjct: 176 TNEVSGADLKQLVNKLALDSIAKDIEKSCQRIYP 209
Score = 37.9 bits (84), Expect = 0.017
Identities = 16/34 (47%), Positives = 22/34 (64%)
Frame = +3
Query: 168 RPPSMFSKRQVGTTLVNRTQGNENCFGRIEGKSF 269
+ P+MF RQ+G TLVNRTQG ++G+ F
Sbjct: 34 KAPNMFQTRQIGKTLVNRTQGQRIASDYLKGRVF 67
Score = 36.3 bits (80), Expect = 0.051
Identities = 13/15 (86%), Positives = 15/15 (100%)
Frame = +2
Query: 128 IVDPFTRKDWYDVKA 172
+VDPF+RKDWYDVKA
Sbjct: 21 VVDPFSRKDWYDVKA 35
>AE014135-5|AAN06541.1| 218|Drosophila melanogaster CG2168-PB,
isoform B protein.
Length = 218
Score = 225 bits (549), Expect = 8e-59
Identities = 108/146 (73%), Positives = 122/146 (83%)
Frame = +1
Query: 259 GRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTL 438
GRVFEVSLADLQ D D ERSFRKFRLIAE VQ RNVLCNFHGMDLTTDK R MVKKWQTL
Sbjct: 14 GRVFEVSLADLQKDIDPERSFRKFRLIAEDVQDRNVLCNFHGMDLTTDKYRSMVKKWQTL 73
Query: 439 IEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSE 618
IEA ++ KT DGY+LRVFCIGFT KD SQRKTCYAQ +QVR IR +M +IIT +V+ ++
Sbjct: 74 IEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKTCYAQQSQVRKIRARMTDIITNEVSGAD 133
Query: 619 LREVVNKLIPDSIAKDIEKACHGI*P 696
L+++VNKL DSIAKDIEK+C I P
Sbjct: 134 LKQLVNKLALDSIAKDIEKSCQRIYP 159
>Y10115-1|CAA71201.1| 270|Drosophila melanogaster ribosomal protein
S3a protein.
Length = 270
Score = 218 bits (532), Expect = 9e-57
Identities = 109/156 (69%), Positives = 125/156 (80%), Gaps = 2/156 (1%)
Frame = +1
Query: 235 KIASEGLKGRVFEVSLA-DLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLR 411
+IAS+ KGRVFEVSL DLQ D D E SFRKFRLIAE VQ RNVLCNFHGMDLTTDK R
Sbjct: 56 RIASDYFKGRVFEVSLVPDLQKDIDPEHSFRKFRLIAEDVQDRNVLCNFHGMDLTTDKYR 115
Query: 412 WMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRK-KMCE 588
MVKKWQTLIEA ++ KT DGY+LRVFCIGFT KD SQRKTCYA +QVR IR +M +
Sbjct: 116 SMVKKWQTLIEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKTCYAHESQVRKIRSGRMTD 175
Query: 589 IITRDVTNSELREVVNKLIPDSIAKDIEKACHGI*P 696
IIT +V+ ++L+++VNKL DSIAKDIEK+C I P
Sbjct: 176 IITNEVSGADLKQLVNKLALDSIAKDIEKSCQRIYP 211
Score = 37.1 bits (82), Expect = 0.029
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = +3
Query: 168 RPPSMFSKRQVGTTLVNRTQGNENCFGRIEGKSF 269
+ P+MF RQ+G TLVNRTQG +G+ F
Sbjct: 34 KAPNMFQTRQIGKTLVNRTQGQRIASDYFKGRVF 67
Score = 36.3 bits (80), Expect = 0.051
Identities = 13/15 (86%), Positives = 15/15 (100%)
Frame = +2
Query: 128 IVDPFTRKDWYDVKA 172
+VDPF+RKDWYDVKA
Sbjct: 21 VVDPFSRKDWYDVKA 35
>AY070949-1|AAL48571.1| 217|Drosophila melanogaster RE04220p
protein.
Length = 217
Score = 204 bits (499), Expect = 9e-53
Identities = 97/133 (72%), Positives = 113/133 (84%)
Frame = +1
Query: 235 KIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRW 414
+IAS+ LKGRVFEVSLADLQ D D ERSFRKFRLIAE VQ RNVLCNFHGMDLTTDK R
Sbjct: 56 RIASDYLKGRVFEVSLADLQKDIDPERSFRKFRLIAEDVQDRNVLCNFHGMDLTTDKYRS 115
Query: 415 MVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEII 594
MVKKWQTLIEA ++ KT DGY+LRVFCIGFT KD SQRKTCYAQ +QVR IR +M +II
Sbjct: 116 MVKKWQTLIEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKTCYAQQSQVRKIRARMTDII 175
Query: 595 TRDVTNSELREVV 633
T +V+ ++L++++
Sbjct: 176 TNEVSGADLKQLL 188
Score = 37.9 bits (84), Expect = 0.017
Identities = 16/34 (47%), Positives = 22/34 (64%)
Frame = +3
Query: 168 RPPSMFSKRQVGTTLVNRTQGNENCFGRIEGKSF 269
+ P+MF RQ+G TLVNRTQG ++G+ F
Sbjct: 34 KAPNMFQTRQIGKTLVNRTQGQRIASDYLKGRVF 67
Score = 36.3 bits (80), Expect = 0.051
Identities = 13/15 (86%), Positives = 15/15 (100%)
Frame = +2
Query: 128 IVDPFTRKDWYDVKA 172
+VDPF+RKDWYDVKA
Sbjct: 21 VVDPFSRKDWYDVKA 35
>AE014135-6|AAN06542.1| 163|Drosophila melanogaster CG2168-PD,
isoform D protein.
Length = 163
Score = 151 bits (366), Expect = 1e-36
Identities = 71/104 (68%), Positives = 85/104 (81%)
Frame = +1
Query: 385 MDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVR 564
MDLTTDK R MVKKWQTLIEA ++ KT DGY+LRVFCIGFT KD SQRKTCYAQ +QVR
Sbjct: 1 MDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKTCYAQQSQVR 60
Query: 565 AIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGI*P 696
IR +M +IIT +V+ ++L+++VNKL DSIAKDIEK+C I P
Sbjct: 61 KIRARMTDIITNEVSGADLKQLVNKLALDSIAKDIEKSCQRIYP 104
>AE014298-2816|AAF48933.1| 1513|Drosophila melanogaster CG12359-PA
protein.
Length = 1513
Score = 29.5 bits (63), Expect = 5.9
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = -2
Query: 307 RQCQLVDQPGKLRKLFPSILPKQFSXPWVRLT 212
+ C L+D P +LR FPS LP+ S P + LT
Sbjct: 163 QNCPLIDSPIRLR--FPSPLPEPPSLPTITLT 192
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,430,230
Number of Sequences: 53049
Number of extensions: 805136
Number of successful extensions: 2297
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2295
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3921660132
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -