Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_E06
         (838 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    25   1.1  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    25   1.1  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    25   1.1  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    25   1.1  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.6  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.6  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.6  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    23   2.6  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    23   3.5  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                23   4.6  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          22   8.1  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   8.1  

>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = -3

Query: 533 LPADSRACLVLAVAVGRSAIVALNIIAQRQSETVALVHKLNRVF 402
           LP DS   L L V +  S  V LN++A+    T   V  +   F
Sbjct: 218 LPPDSGEKLTLGVTILLSLTVFLNLVAESMPTTSDAVPLIGSYF 261


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = -3

Query: 533 LPADSRACLVLAVAVGRSAIVALNIIAQRQSETVALVHKLNRVF 402
           LP DS   L L V +  S  V LN++A+    T   V  +   F
Sbjct: 218 LPPDSGEKLTLGVTILLSLTVFLNLVAESMPTTSDAVPLIGSYF 261


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = -3

Query: 533 LPADSRACLVLAVAVGRSAIVALNIIAQRQSETVALVHKLNRVF 402
           LP DS   L L V +  S  V LN++A+    T   V  +   F
Sbjct: 218 LPPDSGEKLTLGVTILLSLTVFLNLVAESMPTTSDAVPLIGSYF 261


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = -3

Query: 533 LPADSRACLVLAVAVGRSAIVALNIIAQRQSETVALVHKLNRVF 402
           LP DS   L L V +  S  V LN++A+    T   V  +   F
Sbjct: 286 LPPDSGEKLTLGVTILLSLTVFLNLVAESMPTTSDAVPLIGSYF 329


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 533 LPADSRACLVLAVAVGRSAIVALNIIAQ 450
           LP DS   L L V +  S  V LN++A+
Sbjct: 218 LPPDSGEKLTLGVTILLSLTVFLNLVAE 245


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 533 LPADSRACLVLAVAVGRSAIVALNIIAQ 450
           LP DS   L L V +  S  V LN++A+
Sbjct: 218 LPPDSGEKLTLGVTILLSLTVFLNLVAE 245


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 533 LPADSRACLVLAVAVGRSAIVALNIIAQ 450
           LP DS   L L V +  S  V LN++A+
Sbjct: 218 LPPDSGEKLTLGVTILLSLTVFLNLVAE 245


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 533 LPADSRACLVLAVAVGRSAIVALNIIAQ 450
           LP DS   L L V +  S  V LN++A+
Sbjct: 286 LPPDSGEKLTLGVTILLSLTVFLNLVAE 313


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = +3

Query: 537 IALWEN--NKVYFKILNTERNQYLVLGVGTNWNGDHMAFGVNSVDS 668
           IA W +  N++    L+TE+    +    T W   HM+   +++DS
Sbjct: 177 IASWSHGSNEIKLNSLDTEQILDDMYNNNTEWEIVHMSHSESTIDS 222


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 8/36 (22%), Positives = 17/36 (47%)
 Frame = +3

Query: 321 TPINFGSXXSKDIVRDCFPVEFRLIFAENAIKLMYK 428
           +P N  +   + I++D FP++           ++YK
Sbjct: 48  SPFNIDTPNRQKILKDGFPIKCGTFLGSGGFGIVYK 83


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +1

Query: 247 GEEERSHHKCREQTDTKQQDELHGV 321
           GE   S  + RE    ++ D+LH V
Sbjct: 249 GERSCSRDRSREYKKDRRYDQLHNV 273


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 13/46 (28%), Positives = 20/46 (43%)
 Frame = +3

Query: 390 LIFAENAIKLMYKRDGLALTLSNDVQGDDGRPAYGDGKDKTSPRVS 527
           L   E  IK+ ++   +     N  +G    P  GDG  + SP+ S
Sbjct: 307 LCLTERQIKIWFQNRRMKWKKENKSKGT---PGSGDGDTEISPQTS 349


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,887
Number of Sequences: 438
Number of extensions: 3994
Number of successful extensions: 20
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26824317
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)