Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_E05
         (872 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH trans...    24   1.4  
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    23   2.4  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    23   4.1  
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    22   5.5  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          22   7.2  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   9.6  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    21   9.6  

>AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH
           transcription factor protein.
          Length = 193

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 7/39 (17%)
 Frame = +3

Query: 171 RRDAPDFFKDIEH-----HTKEFHKT--LEQQFNSLTKS 266
           RR AP  F+DI+H     + +E  +T  L + F SL KS
Sbjct: 84  RRKAPQSFEDIQHQRVMANVRERQRTQSLNEAFASLRKS 122


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
 Frame = -2

Query: 283 KSCASFDLVSELNCCSKVLWNS-LVWCSMSLKKSGASRRTIAPWARA 146
           KS A+FD V+  +    +LW S L    +  K    +R  I  W  A
Sbjct: 418 KSLAAFDFVARNSDTPIILWTSHLTQADVIEKYLSKARYVIQTWVPA 464


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -2

Query: 274 ASFDLVSELNCCSKVLWNSLV 212
           A  D  SE++C S+ +W+ L+
Sbjct: 102 ALLDTGSEVSCISEEVWSKLI 122


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 10/26 (38%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +2

Query: 131 SLRLHRSGPRSDGATRRS-RLLQGHR 205
           ++RL R+GPR++ A     R++  HR
Sbjct: 179 NIRLKRAGPRTESAVYEPVRIMGVHR 204


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +1

Query: 7   LLXTHYREFLRFD 45
           LL  HY EF+R++
Sbjct: 399 LLENHYEEFVRYE 411


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 9/28 (32%), Positives = 12/28 (42%)
 Frame = -2

Query: 439  GAPRPCARCSASTVPKPPWPCRSRLRAL 356
            G P+P + CS +     P  C   L  L
Sbjct: 1271 GGPQPYSACSENAFAAYPGDCTRYLHCL 1298


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -1

Query: 80  RCEPDCNTEEC 48
           RC+ +CNT  C
Sbjct: 501 RCDEECNTYAC 511



 Score = 21.4 bits (43), Expect = 9.6
 Identities = 6/11 (54%), Positives = 7/11 (63%)
 Frame = -1

Query: 77  CEPDCNTEECV 45
           C  DCN  EC+
Sbjct: 543 CNEDCNNPECL 553


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,492
Number of Sequences: 336
Number of extensions: 2220
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24099889
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)